Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2090 ATGATACACCCTCTTTTTAACGAAGCAACGAAGACAACGCATTTAGGTCAATTGTTTCTTTCACTCTTCAAAGTTTTTATCAGAAACCGCCACAAAAACAGTTTTGAAATTAACTGCATTGGGTTTTGTGTTTTTGGTGGGAAAATCGTAGTAATCATGAATGGTGGAGGGTGTGAAGTGAAGGAGAAAATGGTATACATGTGGGGTTATTTACCGGGAGCTTTACCGCAAAGGACGCCGTTATTGACGCCGGTACTTGTTAGGGTTCCGGCTACATCTGGTGGTTATAACTGGAAGGATGTTTCTGGTGGTGGTTGTGGATTTGCCATGGCTATATCTGAATCAGGAAAGCTTATAACATGGGGTTCGACAGATGATCTAGGCCAAAGTTATGTGACGTCCGGCAAGCACGGGGAAACTCCAGAGCCGTTCTCTCTTCCAAATGAAGTGTCTATTGTAAAAGCTGCTTCTGCGTGGGCACATTGTGTTGCCGCGACAGATTGTGGAGAAGTTTACACATGGGGATGGAAGGAATGTATTCCTTCTGGGAAGGTATTCGGTGAAACTTCGCAAGGGGTAAGTCCTGAAAAAGATGCACAAGGAAAGCCGAGTTCATTCTTGACAGAACAAGTGAGCTCTCGTTCTCAAGTCTCAAAATCCACAGGAGGAACTGTTTCAAGTGGAGAAGAAAGTAGTAAGAGAAGGAAAGTATCTTCGGCAAAGCAAGCGGCTCAAACCTCGTCATCTGGTGATGATATTCTAACAGCAATGCCATGTCTTGTCACACTGAATCCAGGGGTAAAGATAACAAGTGTTGCTGCTGGTGGGCGTCATACCCTAGTATTGTCAGATATAGGACAGGTGTGGGGTTGGGGCTATGGAGGTGAAGGGCAGCTTGGTTTGGGCTCCAGAGTACGTATGGTGTCCTCTCCTCATATTATTCCTTGCATTGATTCCTCTTCACTGGTTCAGGGAAGCATGAGTTCAGAAGGACACAATTTTAGGATTCCTGGAAGTTGTATAAAGGCTATTGCCTGTGGTGGTCGACATAGTGCAGTAATCACAGATGCTGGAGCTGTGCTTGCGTTTGGTTGGGGACTTTATGGACAGTGTGGGCAAGGAAGCACTGACGATGAACTAAGTCCGACCTGCGTATCTTCCTTATTGGGCATTCAAATAGAGGGAGTTGCTGCAGGTTTGTGGCATACTGTCTGTACATCTGCTGATGGTGATGTATATGCATTTGGTGGGAACCAGTTTGGGCAGCTGGGAACTGGTTCCGATCAAGCTGAGACTCTACCAAGACTGCTGGATTGTCCGAGCTTGGAAAATGTGAATGTAAAGACCATATCTTGTGGGGCTCGTCACACTGCTCTAGTAACAGATAATGGAAAAGTCTTTAGCTGGGGATGGAACAAATATGGACAGTGTTGTCTAAGTCGCAATTTGTGGTTGTGGCAGCTCGGCCTTGGGGATGTGATTGACCGAAACATTCCATCTGAAGTCGCAATAGAAGGTTGTATAGCTAAAAACGTTGCATGTGGTTGGTGGCACACTCTTCTTTTGGCCGAGTCACCGACTTGA 1584 0.4583 MIHPLFNEATKTTHLGQLFLSLFKVFIRNRHKNSFEINCIGFCVFGGKIVVIMNGGGCEVKEKMVYMWGYLPGALPQRTPLLTPVLVRVPATSGGYNWKDVSGGGCGFAMAISESGKLITWGSTDDLGQSYVTSGKHGETPEPFSLPNEVSIVKAASAWAHCVAATDCGEVYTWGWKECIPSGKVFGETSQGVSPEKDAQGKPSSFLTEQVSSRSQVSKSTGGTVSSGEESSKRRKVSSAKQAAQTSSSGDDILTAMPCLVTLNPGVKITSVAAGGRHTLVLSDIGQVWGWGYGGEGQLGLGSRVRMVSSPHIIPCIDSSSLVQGSMSSEGHNFRIPGSCIKAIACGGRHSAVITDAGAVLAFGWGLYGQCGQGSTDDELSPTCVSSLLGIQIEGVAAGLWHTVCTSADGDVYAFGGNQFGQLGTGSDQAETLPRLLDCPSLENVNVKTISCGARHTALVTDNGKVFSWGWNKYGQCCLSRNLWLWQLGLGDVIDRNIPSEVAIEGCIAKNVACGWWHTLLLAESPT* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2090 527 SUPERFAMILY RCC1/BLIP-II 63 179 IPR009091 -
Mtr3g2090 527 MobiDBLite consensus disorder prediction 188 228 - -
Mtr3g2090 527 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 450 460 IPR000408 -
Mtr3g2090 527 MobiDBLite consensus disorder prediction 188 249 - -
Mtr3g2090 527 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 59 527 - -
Mtr3g2090 527 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 59 527 - -
Mtr3g2090 527 Pfam Regulator of chromosome condensation (RCC1) repeat 463 522 IPR000408 -
Mtr3g2090 527 Pfam Regulator of chromosome condensation (RCC1) repeat 286 354 IPR000408 -
Mtr3g2090 527 Pfam Regulator of chromosome condensation (RCC1) repeat 409 459 IPR000408 -
Mtr3g2090 527 Pfam Regulator of chromosome condensation (RCC1) repeat 358 405 IPR000408 -
Mtr3g2090 527 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 358 409 IPR000408 -
Mtr3g2090 527 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 464 525 IPR000408 -
Mtr3g2090 527 PRINTS Chromosome condensation regulator RCC1 signature 152 165 IPR000408 -
Mtr3g2090 527 PRINTS Chromosome condensation regulator RCC1 signature 272 288 IPR000408 -
Mtr3g2090 527 PRINTS Chromosome condensation regulator RCC1 signature 288 302 IPR000408 -
Mtr3g2090 527 PRINTS Chromosome condensation regulator RCC1 signature 399 417 IPR000408 -
Mtr3g2090 527 PRINTS Chromosome condensation regulator RCC1 signature 459 480 IPR000408 -
Mtr3g2090 527 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 344 354 IPR000408 -
Mtr3g2090 527 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 272 282 IPR000408 -
Mtr3g2090 527 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 410 463 IPR000408 -
Mtr3g2090 527 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 286 357 IPR000408 -
Mtr3g2090 527 Gene3D - 45 326 IPR009091 -
Mtr3g2090 527 SUPERFAMILY RCC1/BLIP-II 255 525 IPR009091 -
Mtr3g2090 527 Gene3D - 327 527 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2090 Mtr-Chr3 34389469 34393381 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2090 - - gmx:100778841 774.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2090 3 34389469 34393381 Mtr3g2090 3 34389469 34393381 ECH