Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2062 ATGCCTTTCATCTCCAAAATCCAACGCCAATTCGATTACAATCGCTTCAGTTCCACCACTCCCATCGTCATCGACAATGGCGCTTCCTATTTCCGTATTGGATGGGCTGGTGAGTCTGAACCTCGTGTTGTTTTTCGCAACATTGTTCAACGCCCGCGACATAAAGCCACAGGAGAAACTGTTACCATTGTTGGTGACCATGATCCAGCATTGTTGAAGTACTTTGATTGTACTCGCTCTGGACCACGATCAGCATTCGAAAGCGATGTTGTTTTTCAGTTTGAAATAATGGAATATATTCTGGACTTTGCTTTTGATCGAATGGGTGCAACAGGATCAGGGATTGATCATCCTATCCTGATCACAGAATGTGTATGCAACCCAGTTCAATCTCGAAGTAAAATGGCAGAACTTCTTTTTGAGACTTATGGAGTTCCATCTATAGCCTTTGGTGTTGACGCAGCATTCAGCTATAAATATAACCAACAACGAAGTGTTTGTGATAAAGATGGTCTTGCTATGTGTCCTGGATTCGCTACAACCCACGTGATTCCGTTTGTTGACGGGGAACCTATTTATAAAGGAAGCTGTCGCACTAATATTGGTGGATTCCATGTGACTGATTATTTTCAGCGACTTCTTTCACTTAAATATCCTTATCATATGGCTAGATTTACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATTGTTATGTTGCACAGGACTATGTTTCGGAAGCTCGATTGTTTCTGAAAGGAGCTAAGGAGGCCGAAGAAAAAACCAAAATGTGGCAGCTCCCTTGGGTGCCACCTCCAGTTGAGGAGCCTCCTTCTGAGGAAGAGATTGCAAGAAAGGCAGCAATAAGGGAGAAACAAGGTCAAAGGTTGCGAGAAATGGCTGAGGCGAAGAGGTCATCAAAAATAAATGAGCTGGAAAATGAATTACGTGGTTTGGAATTTCTTTTGAATCAACTTGGACATGTTCAAGAGAGTGATGTACGATCCTTCTTAGCAGAGACTGGCTATGTCTCTAGGCAGGAAGTAGAATCTGCCCGTAGTAAAGTTGTGCAGTCCTTGCGGAAACAAAAAGGTGAGCAAACTGAAATTGAAAAACCTGACGCTGCGTCTAATGAGAAGTATACGCTTATAAACATCCCTGATGACATGCTGACGGCAGAGCAGCTTGTTGAAAAGAGGAAACAGCTATCAATTAAATCTATGTCTGATGGGAGGCAGCGATTAAAACAGAAGCGCTATGAAGAGGAATTGGAAAGGGAGAGGAAACAACAGCTAGAGGAGGAGAGACGCCTGGAGAACCCAGAGCTTTACTTGGAACAATTGCGTGCCAAATACAAGGACCTTTCGGAGAAAATTGACCAACGTAAACGGCTCAAAACCAATGGAGGCTCCTCCACGAATGGAAATGGAAATAGTTTGACAGGTAGTGTTGGTCGTGGTGAGAGACTCAGTGCTGCTCAAAGGGAGAGAATGCGCCTCCTGACAACTGCTGCCTTTGATCGTGGTAAGGGGGAGGATACATTTGGTGCCAAAGATGAAGATTGGCAACTTTACAAATTGATGAGCAAAGATAATGATGACGACGACGATGAACCAGATGAGGATAACACAGAGCTTGCCCGCATCTCTTCAAGGCTCCAGGACTTGGATCCAACATTTGTGCCCAAGGTAGAAAGTAGCTCCCAACCTGCTGAGGCGCCACGCATTCGTCCGCTCACCAAAGAAGATTTTCAGATTGTTTTCGGAGTTGAAAGGTTTAGGTGCCCTGAAATTTTGTTCAGTCCAAACTGGATTGGAGTTGATCAGGTGGGGTTAGATGAGATGGCCGGGGTCTCGATGAGAAGGTTATCATGTAAGGACGAAAAGCTGGAACAGAGAATGACCAATTCCATACTTGTGACTGGTGGAAGCTCTCTTTTCCCTGGCATCATTGAACGCCTGGAAGCTGGAATTCGGATGATTAGACCCTGCGGTTCGCCTATAAAAATAGTTAGAGCACTCGATCCGGTTATGGATGCATGGCGTGGTGCGTCTGCTTATGCATCAGCCCCAGGTTTTCATACACAAACATTCACTAGGATGGATTATTATGAAAAAGGTGAAGATTGGCTTCGTAGTTATCAACTGAAATATTCATTGTAA 2163 0.4429 MPFISKIQRQFDYNRFSSTTPIVIDNGASYFRIGWAGESEPRVVFRNIVQRPRHKATGETVTIVGDHDPALLKYFDCTRSGPRSAFESDVVFQFEIMEYILDFAFDRMGATGSGIDHPILITECVCNPVQSRSKMAELLFETYGVPSIAFGVDAAFSYKYNQQRSVCDKDGLAMCPGFATTHVIPFVDGEPIYKGSCRTNIGGFHVTDYFQRLLSLKYPYHMARFTWEKVEDLKMEHCYVAQDYVSEARLFLKGAKEAEEKTKMWQLPWVPPPVEEPPSEEEIARKAAIREKQGQRLREMAEAKRSSKINELENELRGLEFLLNQLGHVQESDVRSFLAETGYVSRQEVESARSKVVQSLRKQKGEQTEIEKPDAASNEKYTLINIPDDMLTAEQLVEKRKQLSIKSMSDGRQRLKQKRYEEELERERKQQLEEERRLENPELYLEQLRAKYKDLSEKIDQRKRLKTNGGSSTNGNGNSLTGSVGRGERLSAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSKDNDDDDDEPDEDNTELARISSRLQDLDPTFVPKVESSSQPAEAPRIRPLTKEDFQIVFGVERFRCPEILFSPNWIGVDQVGLDEMAGVSMRRLSCKDEKLEQRMTNSILVTGGSSLFPGIIERLEAGIRMIRPCGSPIKIVRALDPVMDAWRGASAYASAPGFHTQTFTRMDYYEKGEDWLRSYQLKYSL* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2062 720 PANTHER ACTIN 15 712 IPR004000 -
Mtr3g2062 720 Pfam Actin 585 712 IPR004000 -
Mtr3g2062 720 Pfam Actin 19 268 IPR004000 -
Mtr3g2062 720 Gene3D - 176 202 - -
Mtr3g2062 720 SUPERFAMILY Actin-like ATPase domain 170 712 IPR043129 -
Mtr3g2062 720 SMART actin_3 19 716 IPR004000 -
Mtr3g2062 720 CDD NBD_sugar-kinase_HSP70_actin 22 202 - -
Mtr3g2062 720 MobiDBLite consensus disorder prediction 466 485 - -
Mtr3g2062 720 Gene3D - 680 708 - -
Mtr3g2062 720 Gene3D Actin; Chain A, domain 4 203 263 - -
Mtr3g2062 720 Gene3D - 610 679 - -
Mtr3g2062 720 Gene3D - 17 171 - -
Mtr3g2062 720 MobiDBLite consensus disorder prediction 459 491 - -
Mtr3g2062 720 Coils Coil 445 465 - -
Mtr3g2062 720 SUPERFAMILY Actin-like ATPase domain 18 161 IPR043129 -
Mtr3g2062 720 Coils Coil 309 329 - -
Mtr3g2062 720 Coils Coil 415 437 - -
Mtr3g2062 720 PANTHER ACTIN-RELATED PROTEIN 5 15 712 IPR027664 -
Mtr3g2062 720 Gene3D Actin; Chain A, domain 4 523 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2062 Mtr-Chr3 34056296 34063478 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2062 586 707 Miscellaneous Gene Families AT3G53750 32.787 1.15e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2062 K11672 - gmx:100808396 1166.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2062 3 34056296 34063478 Mtr3g2062 3 34056296 34063478 ECH