Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2061 ATGGAGTCACCACAAGCAAAAAAATCAGGTCTAAACCTCCCGGCTGGGATGTCAACAATAACCTCCCTCCGTCTAGAAACGCTATCAACACCCCCTTCTTCCGCTTCGCCTCGCGCGATATCAAACCTTTCATCAACACCCTCTCCATCAAAATCCTCCAAGTGTAGTGACAGATTCATACCTTGCAGATCATCTTCAAGACTGCATACATTCGGATTAATCGATAACCAATCACCGGTTAAAGAAGGGAGTAATGAGGCTTATAATAGGTTGTTGAAATCTGAGCTTTTTGGACCTGATTTTGCTTCTCCTTCTTCTTCTCCTGCAGGTTGTGGTGTTGGTTCGCCGTTGGTGAGTCCGAGTAAGAATATGTTGAGGTTTAAGACGGAGAGTTGTGGACCTTCTTCGCCTTTTTCGCCTTCCATATTTGGAAGAAATGATGGGTTTTGTAATGAGGGTTTTACTCCTCCTAAGCCTCCTAGAAAAGTGCCTAAGACACCCCACAAGGTTCTGGATGCTCCTTCACTTCAGGATGACTTTTACTTGAATCTTGTGGATTGGTCCTCACAAAATACTCTAGCAGTGGGACTCGGGACTTGTGTTTATCTCTGGAGTGCTTCAAACAGCAAAGTGACTAAGCTGTGTGACTTGGGACCTTATGATGGTGTCTGTTCTGTTCAGTGGACCAAGGAGGGTTCCTTCATATCCATTGGTACAAACGGTGGTCAAGTTCAGATTTGGGATGGTACTAAATGCAAGAAGGTCAGAACAATGGGAGGGCATCAAACAAGAACGGGTGTCTTGGCATGGAATTCTCGCATTTTGGCTTCAGGAAGCAGGGATAGAAACATACTTCAGCATGACATGAGGGTTCCAAGCGACTTTATTGGCAAGCTTGTCGGCCACAAGTCCGAGGTTTGTGGATTGAAATGGTCCTGTGATGACAGAGAACTTGCTTCTGGTGGTAATGATAATCAGCTATTGGTATGGAATCAGCACTCTCAGCAACCAACTTTGAGACTAACAGAGCACACTGCTGCTGTGAAAGCCATTGCTTGGTCACCTCATCAGAGCAACCTTCTCGTATCTGGAGGTGGAACTGCTGATCGGTGTATTCGTTTCTGGAACACTACAAATGGCCACCAATTGAACTCTGTTGACACTGGAAGCCAGGTCTGTAACCTAGCTTGGAGTAAAAATGTAAATGAGCTAGTGAGTACACATGGTTACTCACAAAATCAAATCATGGTGTGGAAATATCCATCACTAGCAAAGGTTGCAACTCTAACCGGCCACAGCATGAGAGTACTATACCTTGCAATGTCTCCTGATGGTCAGACAATAGTGACTGGTGCTGGGGATGAGACTCTGCGGTTTTGGAATGTTTTCCCATCAATGAAAACACCTGCCCCAGTTAAAGATACAGGCCTTTGGTCACTAGGCCGTACCCAAATCCGATGA 1461 0.4545 MESPQAKKSGLNLPAGMSTITSLRLETLSTPPSSASPRAISNLSSTPSPSKSSKCSDRFIPCRSSSRLHTFGLIDNQSPVKEGSNEAYNRLLKSELFGPDFASPSSSPAGCGVGSPLVSPSKNMLRFKTESCGPSSPFSPSIFGRNDGFCNEGFTPPKPPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNTLAVGLGTCVYLWSASNSKVTKLCDLGPYDGVCSVQWTKEGSFISIGTNGGQVQIWDGTKCKKVRTMGGHQTRTGVLAWNSRILASGSRDRNILQHDMRVPSDFIGKLVGHKSEVCGLKWSCDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSNLLVSGGGTADRCIRFWNTTNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSLAKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWNVFPSMKTPAPVKDTGLWSLGRTQIR* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2061 486 Gene3D - 134 463 IPR015943 GO:0005515
Mtr3g2061 486 MobiDBLite consensus disorder prediction 27 57 - -
Mtr3g2061 486 CDD WD40 202 461 - -
Mtr3g2061 486 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 429 462 - -
Mtr3g2061 486 ProSiteProfiles Trp-Asp (WD) repeats profile. 429 462 IPR001680 GO:0005515
Mtr3g2061 486 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 385 IPR001680 GO:0005515
Mtr3g2061 486 ProSitePatterns Trp-Asp (WD) repeats signature. 363 377 IPR019775 -
Mtr3g2061 486 ProSitePatterns Trp-Asp (WD) repeats signature. 448 462 IPR019775 -
Mtr3g2061 486 PANTHER PROTEIN FIZZY-RELATED 3 9 486 - -
Mtr3g2061 486 SMART WD40_4 334 376 IPR001680 GO:0005515
Mtr3g2061 486 SMART WD40_4 208 248 IPR001680 GO:0005515
Mtr3g2061 486 SMART WD40_4 251 288 IPR001680 GO:0005515
Mtr3g2061 486 SMART WD40_4 164 205 IPR001680 GO:0005515
Mtr3g2061 486 SMART WD40_4 292 331 IPR001680 GO:0005515
Mtr3g2061 486 SMART WD40_4 422 461 IPR001680 GO:0005515
Mtr3g2061 486 SMART WD40_4 379 419 IPR001680 GO:0005515
Mtr3g2061 486 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 299 331 - -
Mtr3g2061 486 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 9 486 IPR033010 GO:0010997|GO:0097027|GO:1904668
Mtr3g2061 486 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 340 IPR001680 GO:0005515
Mtr3g2061 486 SUPERFAMILY WD40 repeat-like 162 462 IPR036322 GO:0005515
Mtr3g2061 486 Pfam Eukaryotic translation initiation factor eIF2A 325 460 IPR013979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2061 Mtr-Chr3 34050345 34053647 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2061 296 462 Miscellaneous Gene Families AT5G08390 20.833 7.65e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2061 K03364 - gmx:547741 823.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2061 3 34050345 34053647 Mtr3g2061 3 34050345 34053647 ECH