Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2040 ATGGGAGATTTAACGCAGAGGTTAGAATCTCCCGGCGCTGCCGCTAAGGCGAATGATTTGTGCGTCGAAATCGATCCTCCGCCGTGTCAGGAAAACGCTGTAACTGCCGATGACTGGCGGAAGTGTCTTAAGAAAGTAGTTCCGGCCGTCGTTGTCCTTAGAATCACTGGTCCTCGCTTTTTCGACACTGAGACCACCGACTCCAGCTGCGCTACTGGTTTCGTAGTTGATAAACGCCGTGGTATTATCCTCACCAATCGCCATGTTGTCAAGCCTGGACCTGTTGTTGCTGAAGCTATGTTTTCGAACCGGGAAGAGGTTCCTGTGCATCCTATATACAGAGATCCAGTACATGATTTTGGGTTCTTTCGGTATGATCCTAATGCTATAAAATTTCTAAACTATGAAGAGATACCTCTTGCTCCTGAAGCTGCTTGTGTTGGATTAGAAATCAGAGTTGTTGGTAATGATAGCGGTGAGAAGGTTTCCATCTTGGCCGGTACTATTGCTCGTTTGGATAGGGATGCTCCAATCTATAAGATGGATGGGTATAATGACTTCAACACATTCTATATGCAAGCAGCATCTGGGACCAAAGGAGGGTCAAGTGGTTCCCCAGTTATTGATTGGCAAGGTAGGGCAGTGGCCCTGAATGCTGGGGGAAAAATATTAAGTGCATCAGCATTCTTTTTGCCTCTGGATCGAGTTGTCAGGGCATTAAGGTTTCTTCAAAAGGGGAGTGAAACTTATGTTGATAAATGGAAGCCGGTTTCAATACCCCGGGGTACACTTCAGGCAACTTTTCTCCATAAAGGGTTTGATGAGACTCGTCGGCTTGGCATCAGAAGTGAGACAGAGCAGATAGTACGTAATGCTTCTCCTGCCACTGAAACTGGAATGCTTGTTGTGGAATCTGCGGTGCCAGGTGGTCCAGCCTATGAACATCTGGAACCGGGTGATGTACTTGTTCGTGTCAATGGTGAGGTCATTACTCAATTCCTGAAACTGGAGACTTTGCTTGATGACAGTGTAAACTCAAATATTGAATTGCAAATTGAAAGGGGTGGCACATCAAAGAGCGTAACTCTATTGGTGCAAGATTTGCACTCAATAACTCCCAATTATTTCCTGGAAGTTAGTGGAGCAGTAATCCAACCTCTTTCATATCAGCAGGCTAGAAACTTCCGATTCCATTGTGGCCTTGTTTATGCGGCAGAACCAGGATATATGCTCTCTAAAGCAGGAGTTCCTCGCCATGCAATAATTAAAAAATTTGCTGGTGAAGAAATATCTTGCCTCAAAGAACTAATATCAGTTCTGTCTAAGCTATCAAGGGGTGCTCGAGTACCGTTGGAGTACATAAGCTACGCGGATCGTCATCGAAGGAAGTCGGTGTTAGTGACAGTTGATCGCCATGAATGGTATGCACCTCCCCGGATTTACACTCGGGATGACAGTACCGGCCTGTGGATTGCTAAGCCTGCTTTTCAGCCTGATTGCCTTTTTCTATCATCTGGGGCTAAAGATGCTGGAAATCTAGCCAGTCATCCAATTTCATTGACTGGTGAACGTGCTTGTGGGGGAGATGTTGGTGAAGGTAACCTTCAGGAGTTGGTTGATGGTGTCCCTAGCTTGGAAACTAATTATGAAGATCTTTCAGAGCGTGTAACTCACCATAATGGATCTGATGGGATAGTAAACAAGCAGAGAGTAGATGGTTTATCAACTGATGGAAGTGTTGCTGATATTTCCCTAAATGAATCTGAGAAAAGTAAGCTAGAAAAATCAGGTGCCATACAAGATGATGGGTTAATGGATTTTCAAGGTGCAAATGCTGCCACGGCAAATGCATCGGGCACTGAACGTGTGATTGAGTCTACTCTTGTAAATTTTGAGGTTCATGTTCCTCCATCCTGTATGCTTGATTGTGTTCATTCACAGTCCTTTATTGGAACTGGTGTCATAATATATCACACTAAAGATATGGGATTAGTTGCAGTTGACAAAAATACTGTTGCAGTATCTTCCTCTGACGTGTTGCTATCTTTTGCTGCTTTCCCAGTTGAAATTCCTGGAGAGGTGGTATTTCTCCATCCTGTTCACAATTATGCTCTCATATCATATGATCCATCTGCTTTGGGACCTATTGGTGCTTCCCTGGTTCGTGCTGCAGAATTACTTCCAGAGCCGGCATTATGTCGAGGAGATTCTGTTTACCTTTTGGGCTTAAGTAGAAGCCTTCGAGCAACTTCTAGGAAATCAGTTGTTACCAATCCTTGCGCTGCATTAAGTTTAGAATCTGCTGGCAGCCCACGTTACAGAGCGACCAATATGGAAGTTATCGAGCTTGATACTGATTTTGGTCTTGCAATTTCTGGCGTGCTAACAGATGAACAAGGAAGGGTCCGGGCTTTATGGGGAAGCTTTTCCACTCAGCTGAAAGTAGGTAGCAGTACATCATCTCATCAGTTCGTGAGGGGGATTCCGATTTATTCGATAAGCCAGATCCTGGACAAGATCATATCCGGTGCAAATGGGTCACCTCTTCTCATAAATGGTGTCAAACGGCCTATGCCACTTATGAGAATTTTAGAAGTTGAATTTTATCCAACATTACTTTCAAAGGCTCGTAGTTTTGGACTAAGTGATGTTTGGATTCAGGCACTGGTTAAGAAAGACCCAATAAGACGACAGGTTTTACGTGTTAAAGGTTGTTTGGCTGGGTCAAAGGCTGAAAATCTTTTGGAGCAAGGGGACATGGTTTTAGCAATCAATAAAGAACCAGTCACATGCTTCCTTGATATTGAAAATGCTTGCCAAGCTTTAGATAAATCTAATATCAATGATGACAAGCTTCAGATGACTATTTTTCGGCAGGGACGAGAGATTGAACTTCTTGTGAGAGCAGATGTTAGGGATGGAAATGGCACAACTCGTACAGTTAATTGGTGTGGTTGTTTAGTTCAAGAACCACATTCTGCAGTACGTGCTCTTGGATTTCTTCCTAATGAGGGTCATGGTGTATTTGGGACAAGGTGGAGTTATGGGAGTCCTGCACATAGATATGGTTTGTATGCTCTTCAGTGGATAGTTGAAATTAACGGAAAACCAACTCCAGATCTAGATTCTTTTGTTAATGTGACAAAGGAACTAGAGCATGGAGAGTTTGTTCGGGTAAGGACAATTCACCTCGATGGAAAGCCACAAGTCCTAACATTGAAGCAAGATTTGCACTACTGGCCTACATGGGAATTGAGGTTTAATCCAGACACCGGAATTTGGCATCGTAATGTAATAAAGACATTGAACCACAGTTCTGTATGA 3324 0.4365 MGDLTQRLESPGAAAKANDLCVEIDPPPCQENAVTADDWRKCLKKVVPAVVVLRITGPRFFDTETTDSSCATGFVVDKRRGIILTNRHVVKPGPVVAEAMFSNREEVPVHPIYRDPVHDFGFFRYDPNAIKFLNYEEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTIARLDRDAPIYKMDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGGKILSASAFFLPLDRVVRALRFLQKGSETYVDKWKPVSIPRGTLQATFLHKGFDETRRLGIRSETEQIVRNASPATETGMLVVESAVPGGPAYEHLEPGDVLVRVNGEVITQFLKLETLLDDSVNSNIELQIERGGTSKSVTLLVQDLHSITPNYFLEVSGAVIQPLSYQQARNFRFHCGLVYAAEPGYMLSKAGVPRHAIIKKFAGEEISCLKELISVLSKLSRGARVPLEYISYADRHRRKSVLVTVDRHEWYAPPRIYTRDDSTGLWIAKPAFQPDCLFLSSGAKDAGNLASHPISLTGERACGGDVGEGNLQELVDGVPSLETNYEDLSERVTHHNGSDGIVNKQRVDGLSTDGSVADISLNESEKSKLEKSGAIQDDGLMDFQGANAATANASGTERVIESTLVNFEVHVPPSCMLDCVHSQSFIGTGVIIYHTKDMGLVAVDKNTVAVSSSDVLLSFAAFPVEIPGEVVFLHPVHNYALISYDPSALGPIGASLVRAAELLPEPALCRGDSVYLLGLSRSLRATSRKSVVTNPCAALSLESAGSPRYRATNMEVIELDTDFGLAISGVLTDEQGRVRALWGSFSTQLKVGSSTSSHQFVRGIPIYSISQILDKIISGANGSPLLINGVKRPMPLMRILEVEFYPTLLSKARSFGLSDVWIQALVKKDPIRRQVLRVKGCLAGSKAENLLEQGDMVLAINKEPVTCFLDIENACQALDKSNINDDKLQMTIFRQGREIELLVRADVRDGNGTTRTVNWCGCLVQEPHSAVRALGFLPNEGHGVFGTRWSYGSPAHRYGLYALQWIVEINGKPTPDLDSFVNVTKELEHGEFVRVRTIHLDGKPQVLTLKQDLHYWPTWELRFNPDTGIWHRNVIKTLNHSSV* 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2040 1107 Gene3D - 29 247 - -
Mtr3g2040 1107 SUPERFAMILY PDZ domain-like 301 399 IPR036034 GO:0005515
Mtr3g2040 1107 PANTHER PROTEASE DO-LIKE 7 17 1102 - -
Mtr3g2040 1107 CDD PDZ_serine_protease 277 363 - -
Mtr3g2040 1107 SUPERFAMILY PDZ domain-like 901 1006 IPR036034 GO:0005515
Mtr3g2040 1107 Pfam PDZ domain 302 354 IPR041489 -
Mtr3g2040 1107 SUPERFAMILY PDZ domain-like 1006 1082 IPR036034 GO:0005515
Mtr3g2040 1107 PANTHER PRO-APOPTOTIC SERINE PROTEASE NMA111 17 1102 - -
Mtr3g2040 1107 Pfam Trypsin-like peptidase domain 71 217 - -
Mtr3g2040 1107 Pfam PDZ-like domain 977 1053 IPR025926 -
Mtr3g2040 1107 Pfam PDZ-like domain 370 443 IPR025926 -
Mtr3g2040 1107 Pfam Peptidase family M50 291 394 IPR008915 GO:0004222|GO:0006508
Mtr3g2040 1107 Gene3D - 277 369 IPR036034 GO:0005515
Mtr3g2040 1107 PRINTS HtrA/DegQ protease family signature 81 93 IPR001940 GO:0004252|GO:0006508
Mtr3g2040 1107 PRINTS HtrA/DegQ protease family signature 147 171 IPR001940 GO:0004252|GO:0006508
Mtr3g2040 1107 PRINTS HtrA/DegQ protease family signature 188 205 IPR001940 GO:0004252|GO:0006508
Mtr3g2040 1107 PRINTS HtrA/DegQ protease family signature 315 327 IPR001940 GO:0004252|GO:0006508
Mtr3g2040 1107 SMART pdz_new 877 960 IPR001478 GO:0005515
Mtr3g2040 1107 SMART pdz_new 277 356 IPR001478 GO:0005515
Mtr3g2040 1107 SMART pdz_new 996 1065 IPR001478 GO:0005515
Mtr3g2040 1107 SUPERFAMILY Trypsin-like serine proteases 629 842 IPR009003 -
Mtr3g2040 1107 Gene3D - 980 1078 IPR036034 GO:0005515
Mtr3g2040 1107 Gene3D - 899 973 IPR036034 GO:0005515
Mtr3g2040 1107 SUPERFAMILY Trypsin-like serine proteases 38 241 IPR009003 -
Mtr3g2040 1107 ProSiteProfiles PDZ domain profile. 266 330 IPR001478 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2040 Mtr-Chr3 33803841 33819948 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2040 K22686 - gmx:100809144 1836.23