Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1989 ATGTCTCCTCTGCGCGTGGCAGTTTCAAATTTGCTTAAAAAACTTCGCTTTCCTTCTTCCATAGCCATTTCCTCCGCTATAGTTACCGAAAATTCATCGCCCATCTCATTTTCCGGTAAAAGATTTTGTCAGTGGTATCAAACTGGACAATATGGTTGGAGACAAAATCTTAGGGATCCTTGTTTATGGATTCTTATATCTGGACATGTAGTTTTGACTATGGGGATTAGTGCCAACACTGCGTTTGCAGAGGACGTAACGACCGAAACGTCTTCCGGTAATAGTGCTAATGATGACTTAAATGGATTAAGAAAAATTGAGGATGGTTCTGTAGCATCAAATATACATACAGCGAAATGGAGAGTCTTTACTGATAAAGCAAGAGAGCTTTTCTTTGAGGGAAAATTAGATGATGCTGAAAGACTCTTCGTTGCTGCCATAAAAGAAGCTAAAGAAGGTTTTGGCGAGCAAGATCCGCATGTTGCGTCTTCATGCAACAATCTGGCAGAGTTGTACAGGGTCAAGAAGGCATTTGACAAAGCAGAACCGTTGTATTTGGAAGCTATCAAAATCTTAGAGGAATCTTTTGGTCCCGATGATGTAAGGGTTGCGGTTGCTGTTCACAACCTAGGGCAGTTCTACATTGGACAGCGGATGTTGGAAAAAGCTCTAGTTAGCTATGAGCGCGCTTTGAAGATAAAAAGGCGTGTTCTGGGATATAATCATTCAGAATGTTCAGATACAATGTATCAAATCGGCATGGTTCTGTATCTACAAGGAAAAGAAAAGGATGCTGAGATCATTATTAAGGACTCCATAAGCATGTTAGAGAAAAGTGGCGAAGGGGAGTCAATTGTATGCATTAGAAGACTCCGTTCCCTCTCCCAGATATATTTGAAATCGCATCGTCTTGATGACGCTGAGATGGTCCAGAGAAAGATCCTGAATATAATGGAATTCTCAAAGGGATGGAAATCGTTGGACACAGTTATTGCAGCTGAATCCTTGGCCCTGACCCTACAAGCATCTTCCGAAACAAAACAATCAAAAGAGCTTCTTGAAAGATGTCTTGAGGTCCGGAGAGCCTTACTTCCTGGTGATCATATTCAGATTGGTGCAAACCTGCTTCATCTTGCAAGAGTGGCAATGCTTGATTTCAGTCAAAACAAAAAATTGGATGTTTCTAGAGCTAAAGCTGAGCTTGGTATAGCAAAGGATTATTTGCATAATTCCATAAGGATTGTGCGTCAATGTTTAGATACGATATTAAAACAAAAAGACAAGTCGAAGAAAACTAGTGTTCGTGGACATACTAGTAAGGAAGCCCAAGCAGCACTTGTCATATTGTTGCAATCACTCAGTACTCTATCATCGTTGGAGTTGGCTAAGGAAGAATTGCAGGAGATTCAGAAAGGGGATATTAACGTCAAGGCTAAAGAGGCACTCCTTCAATGCATTGCTGCTTACAATGAGTTTGTTGTACATAAGAAGTCCATTGCCGATTACCCTGAAATAAAGAACGAATATCTTTCATGTTTTAAGCGTGCTCAAAGCTTGCTTGGCAATAAACTTGATGGAGAAGGTATCCAAAAGCTGAATCAAACATCATGA 1611 0.4047 MSPLRVAVSNLLKKLRFPSSIAISSAIVTENSSPISFSGKRFCQWYQTGQYGWRQNLRDPCLWILISGHVVLTMGISANTAFAEDVTTETSSGNSANDDLNGLRKIEDGSVASNIHTAKWRVFTDKARELFFEGKLDDAERLFVAAIKEAKEGFGEQDPHVASSCNNLAELYRVKKAFDKAEPLYLEAIKILEESFGPDDVRVAVAVHNLGQFYIGQRMLEKALVSYERALKIKRRVLGYNHSECSDTMYQIGMVLYLQGKEKDAEIIIKDSISMLEKSGEGESIVCIRRLRSLSQIYLKSHRLDDAEMVQRKILNIMEFSKGWKSLDTVIAAESLALTLQASSETKQSKELLERCLEVRRALLPGDHIQIGANLLHLARVAMLDFSQNKKLDVSRAKAELGIAKDYLHNSIRIVRQCLDTILKQKDKSKKTSVRGHTSKEAQAALVILLQSLSTLSSLELAKEELQEIQKGDINVKAKEALLQCIAAYNEFVVHKKSIADYPEIKNEYLSCFKRAQSLLGNKLDGEGIQKLNQTS* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1989 536 SUPERFAMILY TPR-like 242 364 IPR011990 GO:0005515
Mtr3g1989 536 Pfam Tetratricopeptide repeat 166 235 - -
Mtr3g1989 536 ProSiteProfiles TPR repeat profile. 204 237 IPR019734 GO:0005515
Mtr3g1989 536 SUPERFAMILY TPR-like 118 265 IPR011990 GO:0005515
Mtr3g1989 536 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 5 523 - -
Mtr3g1989 536 SMART tpr_5 204 237 IPR019734 GO:0005515
Mtr3g1989 536 SMART tpr_5 162 195 IPR019734 GO:0005515
Mtr3g1989 536 SMART tpr_5 120 153 IPR019734 GO:0005515
Mtr3g1989 536 SMART tpr_5 330 363 IPR019734 GO:0005515
Mtr3g1989 536 SMART tpr_5 246 279 IPR019734 GO:0005515
Mtr3g1989 536 Gene3D Tetratricopeptide repeat domain 116 280 IPR011990 GO:0005515
Mtr3g1989 536 Gene3D Tetratricopeptide repeat domain 281 471 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1989 - - ccaj:109796654 768.459