Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1590 ATGGAGGAACAATTCTCATTTAAGAATCTTCACAGCAGAGAGTATTCCGGTCACAAGAAGAAGGTGCATTCAGTGGCTTGGAATTGCATTGGCACAAAACTTGCTTCTGGTTCTGTTGATCAAACTGCTCGAATTTGGCATATTGACCCACATGCCCATGGTAAGGTTAAAGATATTGAATTGAAGGGTCACACTGATAGTGTGGACCAGCTATGTTGGGACCCCAAACATCCCGATCTTATTGCAACTGCTTCAGGGGACAAAACTGTTCGTCTATGGGATGCTCGTAGTGGAAAATGCTCACAACAGGCAGAGCTTAGTGGGGAGAATATCAACATCACCTACAAACCTGATGGTACTCATGTAGCTGTGGGTAATAGGGACGACGAGTTAACAATACTTGATGTTCGGAAATTCAAACCAATGCACAGGCGCAAGTTCAACTATGAGGTAAATGAGATTGCTTGGAATATGACTGGCGAGATGTTCTTTCTAACAACAGGAAATGGCACTGTGGAAGTATTATCTTATCCATCTCTTCGACCTCTTGATACTCTCATGGCTCATACAGCGGGTTGTTATTGCATTGCAATTGACCCAACTGGAAGACATTTCGCTGTTGGAAGTGCTGATTCCCTTGTCAGCTTGTGGGTTATTTCGGAGATGCTTTGTGTGCGGACCTTTACAAAGCTCGAATGGCCTGTCCGGACAATTAGTTTCAATCATACTGGGGACTTGATTGCTTCAGCAAGTGAAGACTTGTTCATTGATATTTCCAATGTTCATACCGGAAAAACAGTACATCACATTCCTTGTAGGGCTGCCATGAATAGTGTTGAGTGGAATCCTAAATACAATGTACTTGCATATGCTGGAGATGACAAAAACAAGTATCAGGCTGACGAAGGTGTTTTTCGAATTTTTGGTTTTGAAAATGCTTAG 942 0.4257 MEEQFSFKNLHSREYSGHKKKVHSVAWNCIGTKLASGSVDQTARIWHIDPHAHGKVKDIELKGHTDSVDQLCWDPKHPDLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPMHRRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLSYPSLRPLDTLMAHTAGCYCIAIDPTGRHFAVGSADSLVSLWVISEMLCVRTFTKLEWPVRTISFNHTGDLIASASEDLFIDISNVHTGKTVHHIPCRAAMNSVEWNPKYNVLAYAGDDKNKYQADEGVFRIFGFENA* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1590 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 99 - -
Mtr3g1590 313 Gene3D - 146 309 IPR015943 GO:0005515
Mtr3g1590 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 217 - -
Mtr3g1590 313 PANTHER THO COMPLEX SUBUNIT 3 THO3 3 312 IPR040132 GO:0006406
Mtr3g1590 313 Gene3D - 5 145 IPR015943 GO:0005515
Mtr3g1590 313 SMART WD40_4 54 94 IPR001680 GO:0005515
Mtr3g1590 313 SMART WD40_4 263 301 IPR001680 GO:0005515
Mtr3g1590 313 SMART WD40_4 8 47 IPR001680 GO:0005515
Mtr3g1590 313 SMART WD40_4 138 176 IPR001680 GO:0005515
Mtr3g1590 313 SMART WD40_4 221 260 IPR001680 GO:0005515
Mtr3g1590 313 SMART WD40_4 179 218 IPR001680 GO:0005515
Mtr3g1590 313 ProSitePatterns Trp-Asp (WD) repeats signature. 81 95 IPR019775 -
Mtr3g1590 313 PRINTS G protein beta WD-40 repeat signature 34 48 IPR020472 -
Mtr3g1590 313 PRINTS G protein beta WD-40 repeat signature 81 95 IPR020472 -
Mtr3g1590 313 PRINTS G protein beta WD-40 repeat signature 205 219 IPR020472 -
Mtr3g1590 313 CDD WD40 11 295 - -
Mtr3g1590 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 227 IPR001680 GO:0005515
Mtr3g1590 313 SUPERFAMILY WD40 repeat-like 11 295 IPR036322 GO:0005515
Mtr3g1590 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 103 IPR001680 GO:0005515
Mtr3g1590 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 15 49 IPR001680 GO:0005515
Mtr3g1590 313 Pfam WD domain, G-beta repeat 60 94 IPR001680 GO:0005515
Mtr3g1590 313 Pfam WD domain, G-beta repeat 12 46 IPR001680 GO:0005515
Mtr3g1590 313 Pfam WD domain, G-beta repeat 182 217 IPR001680 GO:0005515
Mtr3g1590 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 15 49 - -
Mtr3g1590 313 Pfam Anaphase-promoting complex subunit 4 WD40 domain 234 282 IPR024977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1590 Mtr-Chr3 27727891 27735737 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1590 151 309 Miscellaneous Gene Families AT5G08390 22.500 6.47e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1590 K12880 - gmx:100812126 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1590 3 27727891 27735737 Mtr3g1590 3 27727891 27735737 ECH