Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1001 ATGCAGAATATGTTACGGTCAAAGCCGATCAGTACCTTTTCTAGTAGTGCTAGGAGCTTTTTTCTTGGTGGTACACGATGTAATGCACCAGATGCTAATTCCTGCACGTGCAACGAGGACGAAACATGTGCGTCAATAAGACAACAGAGGAAAAGGGATCAAGATTTACTTGCACAGAAGCCAACCTCTATAGTAGCCAAAACACTTGCACAGAAGCCAAACTCTATAGTAGCCAGCACACTTGCCCAGAAGCCAACCTCTATAGTAGCCAACGCTACATCTCGAGTAGAAGGAGCCTCAGTTTCAGAAACCCCGGCAAGTGGAACAAGTTCTCACAAGGTCGAGAGTGTTGATAAATCTGGCAGTGTACAACAAGTCAGGTCTACTTCACTTCCTTCAAGTAAATCAAACTCCGTAGCATATGCTTGTGTGGCTGATGATAGTCAGAATCATGTTACAGAGTCTTCACCTCTTGATGGTGAGCAGATTTATAGGGCCGGTATTGCAGCCGTCAATTTCATTTCTGATTTAGTTAATAGTAAGCTTCCTTTATCAGACGGGATGGGAATCCTAAGCTACTCTAAAAATTGTATGGTTGAACCTATAGCCAACATAAGATCTTCCAATGTAAAAAAAATTAGAAAGGAAGACTTTATTAGTGTTCATCCCAGACCACCTGTTTCTACTGAGCGAGGTCCATCAAACAATACTAGTAGTTATCATGGTTCAAAGGGGAGAGGTGATAAATCAAAGATAGGTAAAGGCTTTCAGCATGCTGCTTCTTCAGGGACCGGGAAGTCAGAGGTGGCTCCCAGTATTCCTTTCAATAATTATGACAGCAGACCCTTGCCACAGAGGACAAGAACTCATGCAAATCGATTTGTCACTAAATTTGATAGCAACATGCAAACTTCAAACTCGCAGATGTTGGGGTCGTTCAAGGAAAGCTTCAATAGATACCCCAGGGATCTGAAAACATCAACTGGAACTACTTCATCAAAAGCACATTATGCGAAGACAAATCGCCGCGGTGTGGAAGTTGTTAAAGATATACTGCAACAGTTAAAGTGGGGTCCTGCTACAGAAGAGGCTCTTTATAATCTGAATTTTTTTATAGATGCATATCAAGGCAACCAAGTCCTAAAGCAACTTGAAGACCACTCTGTTGCTCTAAGCTTCTTTTACTGGTTAAAGCGACAACCGAGCTTCCGGCATGATGGGCATACTTACACCACCATGGTTGGTATCTTGGGGCGTGCAAGGGAGTTTGGTGCCATAAACAATTTGTTGGAACAGATGGTCAAGGATGGATGTCAGCCTAATGTTGTAACATATAATCGCCTGATTCACAGCTATGGCCGCGCAAACTACCTAAAGGAAGCACTAAATGTCTTCAATCAAATGCAGGAGAAGCGATGTGAGCCTGATCGTGTCACTTACTGCACGCTCATCGATATCCATGCAAAGGCTGGATATCTTGATGTGGCCATGTCCATGTATGAAAGAATGCAACAAGTTGGCCTGTCTCCTGACACGTTTACTTACAGTGTGATGATCAACTGTTTGGGAAAATCTGGTAATTTAGCTGCTGCTGACAGACTATTTGGTGAAATGGTTGATCAAGGTTGTGTTCCTAATATTGTCACCTACAATATCATGATTGCTTTGCAAGCTAAAGCAAGGAATTATGAGGCAGCATTGAAACTATATCGTGACATGCAGAATGCTGGATTTAGACCTGACAAAGTTACATATAGCATTGTAATGGAGGTGCTTGGTCACTGTGGGTATCTTGAGGAAGCAGAAGCAGTCTTTGTTGAGATGAAGCAGAGGAATTGGGTTCCAGACGAACCTGTTTATGGTCTTCTGGTAGACCTATGGGGAAAGGCTGGTAATGTTGAGAAGGCTTGGGAATGGTACGGGGCAATGCTCAGTGCAGGTTTGCTTCCAAATGTACCAACTTGCAATTCTCTCCTCAGTGCATTTCTTAGGGTGCATCGATTGCCAGATGCGTATAATCTTCTCCAAAGCATGGTAGCACTTGGCCTAAGTCCTTCTTTGCAGACTTACACTTTGCTTCTCAGCTGCTGTACAGACGCACAATCACAGTATGATATGGGATTTTGTTGTGAGCTGATGAAAGTCAGTGGCCATCCTGCTCATGTATTTTTACAGTCAATGCCGGCAGCAGGGCCCGACGGTCAGAATGTGAGGGATCACGCAAGCAAATTTTTGGACCTGATGCATTCAGAGGATAGAGAGGGCAAACGAGGACTTGTAGATGCAGTGGTGGATTTTCTTCACAAGTCCGGGCTCAAAGAGGAAGCTGGTTCGGTTTGGGAGGTGGCTGCACAAAGAAATGTATATCCAGATGCTGTGAAGGAGAAAAGCCGCTGTTACTGGCTAATAAATCTTCATGTCATGTCTGATGGAACAGCCGTAACTGCATTGTCTAGGACACTTGCTTGGTTTCGCAAAGAGATGCTGGTATCTGGTGTTAGCCCTAACCGGATAGATATTGTGACTGGATGGGGCAGAAGGAGCAGGGTCACAGGTTCTTCTCTTGTGAGACAGTCGGTACATGAACTGTTGCGTCTATTTAGTTTTCCTTTTTTCACAGAAAATGGGAATTCAGGTTGTTTTGTGGGTTGTGGGGAGCCTCTTAGTGAATGGTTGCACCACTCTTACGTGGAGCGAATGCATTTACTCTAG 2712 0.4399 MQNMLRSKPISTFSSSARSFFLGGTRCNAPDANSCTCNEDETCASIRQQRKRDQDLLAQKPTSIVAKTLAQKPNSIVASTLAQKPTSIVANATSRVEGASVSETPASGTSSHKVESVDKSGSVQQVRSTSLPSSKSNSVAYACVADDSQNHVTESSPLDGEQIYRAGIAAVNFISDLVNSKLPLSDGMGILSYSKNCMVEPIANIRSSNVKKIRKEDFISVHPRPPVSTERGPSNNTSSYHGSKGRGDKSKIGKGFQHAASSGTGKSEVAPSIPFNNYDSRPLPQRTRTHANRFVTKFDSNMQTSNSQMLGSFKESFNRYPRDLKTSTGTTSSKAHYAKTNRRGVEVVKDILQQLKWGPATEEALYNLNFFIDAYQGNQVLKQLEDHSVALSFFYWLKRQPSFRHDGHTYTTMVGILGRAREFGAINNLLEQMVKDGCQPNVVTYNRLIHSYGRANYLKEALNVFNQMQEKRCEPDRVTYCTLIDIHAKAGYLDVAMSMYERMQQVGLSPDTFTYSVMINCLGKSGNLAAADRLFGEMVDQGCVPNIVTYNIMIALQAKARNYEAALKLYRDMQNAGFRPDKVTYSIVMEVLGHCGYLEEAEAVFVEMKQRNWVPDEPVYGLLVDLWGKAGNVEKAWEWYGAMLSAGLLPNVPTCNSLLSAFLRVHRLPDAYNLLQSMVALGLSPSLQTYTLLLSCCTDAQSQYDMGFCCELMKVSGHPAHVFLQSMPAAGPDGQNVRDHASKFLDLMHSEDREGKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQRNVYPDAVKEKSRCYWLINLHVMSDGTAVTALSRTLAWFRKEMLVSGVSPNRIDIVTGWGRRSRVTGSSLVRQSVHELLRLFSFPFFTENGNSGCFVGCGEPLSEWLHHSYVERMHLL* 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1001 903 SMART SMR_2 800 892 IPR002625 -
Mtr3g1001 903 PANTHER OS12G0638900 PROTEIN 79 877 - -
Mtr3g1001 903 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 79 877 - -
Mtr3g1001 903 Pfam PPR repeat family 650 697 IPR002885 -
Mtr3g1001 903 Pfam PPR repeat family 545 591 IPR002885 -
Mtr3g1001 903 Pfam PPR repeat family 440 486 IPR002885 -
Mtr3g1001 903 Gene3D Tetratricopeptide repeat domain 592 707 IPR011990 GO:0005515
Mtr3g1001 903 Gene3D Tetratricopeptide repeat domain 490 591 IPR011990 GO:0005515
Mtr3g1001 903 Gene3D Tetratricopeptide repeat domain 372 489 IPR011990 GO:0005515
Mtr3g1001 903 Pfam PPR repeat 507 539 IPR002885 -
Mtr3g1001 903 SUPERFAMILY SMR domain-like 801 881 IPR036063 -
Mtr3g1001 903 ProSiteProfiles Smr domain profile. 803 884 IPR002625 -
Mtr3g1001 903 Coils Coil 553 573 - -
Mtr3g1001 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Mtr3g1001 903 TIGRFAM PPR: pentatricopeptide repeat domain 654 686 IPR002885 -
Mtr3g1001 903 TIGRFAM PPR: pentatricopeptide repeat domain 548 581 IPR002885 -
Mtr3g1001 903 TIGRFAM PPR: pentatricopeptide repeat domain 478 512 IPR002885 -
Mtr3g1001 903 TIGRFAM PPR: pentatricopeptide repeat domain 619 652 IPR002885 -
Mtr3g1001 903 TIGRFAM PPR: pentatricopeptide repeat domain 513 547 IPR002885 -
Mtr3g1001 903 TIGRFAM PPR: pentatricopeptide repeat domain 583 617 IPR002885 -
Mtr3g1001 903 TIGRFAM PPR: pentatricopeptide repeat domain 443 476 IPR002885 -
Mtr3g1001 903 TIGRFAM PPR: pentatricopeptide repeat domain 408 442 IPR002885 -
Mtr3g1001 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 616 650 IPR002885 -
Mtr3g1001 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 581 615 IPR002885 -
Mtr3g1001 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 441 475 IPR002885 -
Mtr3g1001 903 MobiDBLite consensus disorder prediction 95 134 - -
Mtr3g1001 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 651 685 IPR002885 -
Mtr3g1001 903 Pfam PPR repeat 619 648 IPR002885 -
Mtr3g1001 903 Pfam PPR repeat 409 438 IPR002885 -
Mtr3g1001 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 511 545 IPR002885 -
Mtr3g1001 903 MobiDBLite consensus disorder prediction 260 286 - -
Mtr3g1001 903 MobiDBLite consensus disorder prediction 216 286 - -
Mtr3g1001 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 476 510 IPR002885 -
Mtr3g1001 903 MobiDBLite consensus disorder prediction 229 243 - -
Mtr3g1001 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 546 580 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1001 Mtr-Chr3 16003802 16007723 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1001 415 836 Glycosyltransferase AT1G05670 21.495 1.69e-21 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1001 - - gmx:100819996 1413.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1001 3 16003802 16007723 Mtr3g1001 3 16003802 16007723 ECH