Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0940 ATGGCGACGAGTATAGGGATAATGGATAGCGCATATTTTGTCGGTAGAAATGAGATTCTGAGTTGGATCAATAAACGTCTTCAACTTAATCTCTCTCGCATTGAAGAGGCTGCATCTGGTGCTGTGCAATGCCAGATGTTGGACATGACGTATCCAGGGGTTGTGCCGATGCACAAGGTGAATTTTGATGCAAAGTCAGAGTATGATATGATTCAAAACTATAAAGTTCTACAGGATGTGTTCAACAAGCTGAAAATTGCAAAGCATATTGAAGTCAACAGGCTTGTTAAGGGCCGACCTTTGGACAACTTGGAGTTCCTACAATGGCTGAAACGTTACTGTGATTCTGTTAATGGTGGCATTATGAATGAGAACTATAATCCCGTGGAGCGTAGGATTAAGGGTGGAAAGGATCGAAATGTTAAGAGTTTAAGGAGCTCAAAGTCACTTCAATCAAACACTACGAATAATACTGGTTCAGGCGAACTAAGTCCAAATAGAAACTCAGGACCTAAGATATCGAGGTCAAGTGGAGGATCGGATGGGACTAATTCGTCAGCAGAGATTCAGGCCTTGTCCAAGCAGGTTACTGACCTCAAAATCTCGGTGGATCTCTTGGAAAAAGAAAGAGACTTTTACTTTTCAAAACTACGGGATATAGAAATTCTATGCCAGACATCAGAACTGGAGAATGAACCTATATCGGTAGCAATTAAGAAGATTTTGTATGCTGCTGATGCAAAAGAGTCAGCATTAGAGGAAGCTCAGGCTTACATTAATCAAACATTGGATGATGTTGAAGATCAACCAGAAACTGACGCATGA 825 0.4109 MATSIGIMDSAYFVGRNEILSWINKRLQLNLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKSEYDMIQNYKVLQDVFNKLKIAKHIEVNRLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRIKGGKDRNVKSLRSSKSLQSNTTNNTGSGELSPNRNSGPKISRSSGGSDGTNSSAEIQALSKQVTDLKISVDLLEKERDFYFSKLRDIEILCQTSELENEPISVAIKKILYAADAKESALEEAQAYINQTLDDVEDQPETDA* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0940 274 Pfam Calponin homology (CH) domain 16 114 IPR001715 GO:0005515
Mtr3g0940 274 Pfam EB1-like C-terminal motif 206 244 IPR004953 GO:0008017
Mtr3g0940 274 MobiDBLite consensus disorder prediction 132 185 - -
Mtr3g0940 274 PANTHER MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 1B 1 271 - -
Mtr3g0940 274 ProSiteProfiles Calponin homology (CH) domain profile. 13 115 IPR001715 GO:0005515
Mtr3g0940 274 SUPERFAMILY Calponin-homology domain, CH-domain 5 132 IPR036872 -
Mtr3g0940 274 ProSiteProfiles EB1-C terminal (EB1-C) domain profile. 181 251 IPR004953 GO:0008017
Mtr3g0940 274 PANTHER MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 1 271 IPR027328 GO:0008017
Mtr3g0940 274 MobiDBLite consensus disorder prediction 145 185 - -
Mtr3g0940 274 SUPERFAMILY EB1 dimerisation domain-like 188 247 IPR036133 GO:0008017
Mtr3g0940 274 Coils Coil 189 209 - -
Mtr3g0940 274 Gene3D - 181 262 - -
Mtr3g0940 274 Gene3D - 6 134 IPR036872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0940 Mtr-Chr3 14159969 14165093 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0940 K10436 - gmx:100809691 449.129