Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0880 ATGAACAATGTGGAGCCTGATCAAATTGTTTTGACGACTGCTCTCTCTGCTTGTGCGGATGCTGGGGGACTCGAAATGGGTGAATGGATTCATGATTTTGTTCGGCGTAAACAAGGGATGAAAATTGATTTGCATTTGAATAATGCTCTTATAAATATGTATGCTAAGTGTGGTGATATTGGAAATGCAAGGAAGTTGTTTGATAATACAAGAAACAAAGATGTCACAACTTGGACTTCTATGATTGTTGGGCATGCGGTACATGGCGAAGCACGTGAAGCTCTTCAACTTTTCTCAGAAATGAACTTTATTGTTTCCCCAAACGATGTAACGTTCATTGGAGTTTTAATGGCTTGTAGCCATGCAGGGTTGGTCGAGGAAGGGAAACGAAATTTTCGAAGTATGAACGAAGACTATGGTATAGAACCAAGAGAGCCTCATTTTGGCTGCATGGTGGACCTCTTCTGCCGAAGCGGCCATTTGAGAGAAGCATATGACTTCATTATGGAGATGCCGGTGCCTCCGAATGCAGTCATGTGGCGAACCTTACTGGGGGCGTGTAGCCTCCATGGTAATTTAAAGCTAGCCACTGAAGTTCGGGATAAGTTGATCAACTTGGACCCTGGCTATGTTGGTGACAGTGTTGCTTTGTCAAATATTTACGCGGATAAAGAAATGTGGGATAAAAAGATTATTGTTAGGAATCAGATTAAACAGTCTAAAGCTCATGGCTTCAGCTCAATTGAAGTGGGAAGTTTGGTTAGTTAA 768 0.4206 MNNVEPDQIVLTTALSACADAGGLEMGEWIHDFVRRKQGMKIDLHLNNALINMYAKCGDIGNARKLFDNTRNKDVTTWTSMIVGHAVHGEAREALQLFSEMNFIVSPNDVTFIGVLMACSHAGLVEEGKRNFRSMNEDYGIEPREPHFGCMVDLFCRSGHLREAYDFIMEMPVPPNAVMWRTLLGACSLHGNLKLATEVRDKLINLDPGYVGDSVALSNIYADKEMWDKKIIVRNQIKQSKAHGFSSIEVGSLVS* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0880 255 PANTHER - 2 253 - -
Mtr3g0880 255 TIGRFAM PPR: pentatricopeptide repeat domain 77 101 IPR002885 -
Mtr3g0880 255 Gene3D Tetratricopeptide repeat domain 1 102 IPR011990 GO:0005515
Mtr3g0880 255 Gene3D Tetratricopeptide repeat domain 103 250 IPR011990 GO:0005515
Mtr3g0880 255 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 43 77 IPR002885 -
Mtr3g0880 255 Pfam PPR repeat 178 204 IPR002885 -
Mtr3g0880 255 Pfam PPR repeat 77 101 IPR002885 -
Mtr3g0880 255 Pfam PPR repeat 148 171 IPR002885 -
Mtr3g0880 255 Pfam PPR repeat 48 69 IPR002885 -
Mtr3g0880 255 PANTHER - 2 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0880 Mtr-Chr3 13034059 13034826 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0880 9 251 Glycoside Hydrolase AT3G49170 42.915 4.45e-61 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0880 - - lang:109327537 411.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g0880 3 13034059 13034826 Mtr3g0880 3 13034059 13034826 ECH