Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0580 ATGAGACTCTCCCTTGCATTGTTCATCTTTTTGGCCTCTCTTCAAGTTACTCTAAGTAAAGATGTTGAACATGGTTTGATACTAGTAAATGGAGCTCAAGCAAAAGCTGAAATAGGTGATAACTTCATTTGCGCAACGATTGATTGGTGGCCTCCTGAATTATGCAACTTCGGCGTTTGTTCTTGGGGACATTCATCTATTGTCAATTTGGACTTATCTCATCCTCTCCTTGCCAAAGCAATCCAAGCCCTCAAACCTTTGAGGATAAGACTTGGAGGTTCTCTGCAAGACCAGGTGGTGTATAACGTAGGAAACTTGAAGTCTCCTGGTCATCCATTTCAAAAGGTGAAAGGTGGATTTTTAGGATTTTCAGAGGGATCTTTACACATGCAAAGGTGGGATGAGCTGAATCATTTTTTCAACAAGACAGGGGCCATTGTGATGTTTGGGTTGAATGCGCTCAGTGGGAGGCACAAGATTAGTAACACTAGTAATGTTTGGGAAGGAGCCTGGGACCCTACAAATGCTTATGATTTTATAAAGTACACTGTTTCAAAGGGATACAAGATTGATGCATGGGAATTTGGTAATGAGTTGAGTGGTACAGGCGTTGGTGCATCAGTTGGCGTTGCACAGTATGGGAAAGACGTGATAAACCTTAAACGAATTCTAGATGAGTTATACAAGAACTCGAGGTTCAAACCCTTACTTGTAGCACCTGATGGAAGTTATGATAAGGAATGGTACAATAAGCTTCTTCAGCTTTCTGGTCCAGGCGTAATCAATGTTCTGACTCATCATTTATATAACATAGGCCGAGCTAATGACACGCATCTTATAGAGAGAATTTTAGATCCTGATCACTTGAGCGAAGTGGAAACAACCTTCAGAAATCTTTCAGAAACCATTCAAAAACATGGTCCTTGGGCTTCTGCATGGGTAGGAGAATCTGGCGGGATATCTAGGAGTGGCAGTCGTGATGTATCTAACACATTTGTGAATAGCTTTTGGTACTTAGATCAACTTGGAATGGCATCCACCTACAATACTAAAGTTTATTGTAGGCAGTCATTAATTGGAGGGAACTATGGTCTTCTCAATACCTCCACTCTCGCTCCTAATCCTGACTACTACAGTGCGCTGTTGTGGTATCGGCTAATGGGAAAGAAGGTTCTTGGTGTTAGGAGTAATATTTCTTCGCCATTTTTACGCACTTACTCCCATTGTTCAAAAGACAGTGCTGGTGTAACATTACTGTTGATCAACTTAAGCAATCAAACTGAGTTCATACTCAATGTGAAAAACCATGTAACTGTTAAAGCAAATGAAGTGGCCAAATTCAGGGAAGAGTATCACTTAACTCCAAAAGATAATAATCTCAGAAGCCAAACCATGGTGCTGAATGGCATTCCACTTAAGTTAACAAATAAAGGGGATATTCCAGCAATGGATCCAGTGCAAAATAATGTGAAATCTCCAATATACATAGATCCTTTGTCCATTGCATTTATTGTGTACCCAAACTTTGATGCTCCAGCTTGTGCCAGGCACTCAAAACTATAA 1563 0.4056 MRLSLALFIFLASLQVTLSKDVEHGLILVNGAQAKAEIGDNFICATIDWWPPELCNFGVCSWGHSSIVNLDLSHPLLAKAIQALKPLRIRLGGSLQDQVVYNVGNLKSPGHPFQKVKGGFLGFSEGSLHMQRWDELNHFFNKTGAIVMFGLNALSGRHKISNTSNVWEGAWDPTNAYDFIKYTVSKGYKIDAWEFGNELSGTGVGASVGVAQYGKDVINLKRILDELYKNSRFKPLLVAPDGSYDKEWYNKLLQLSGPGVINVLTHHLYNIGRANDTHLIERILDPDHLSEVETTFRNLSETIQKHGPWASAWVGESGGISRSGSRDVSNTFVNSFWYLDQLGMASTYNTKVYCRQSLIGGNYGLLNTSTLAPNPDYYSALLWYRLMGKKVLGVRSNISSPFLRTYSHCSKDSAGVTLLLINLSNQTEFILNVKNHVTVKANEVAKFREEYHLTPKDNNLRSQTMVLNGIPLKLTNKGDIPAMDPVQNNVKSPIYIDPLSIAFIVYPNFDAPACARHSKL* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0580 520 PANTHER HEPARANASE-RELATED 1 519 - -
Mtr3g0580 520 Pfam Glycosyl hydrolase family 79, N-terminal domain 26 343 IPR005199 GO:0016020|GO:0016798
Mtr3g0580 520 PANTHER GLYCOSIDE HYDROLASE FAMILY 79 AMINO-TERMINAL DOMAIN PROTEIN 1 519 - -
Mtr3g0580 520 Gene3D Glycosidases 56 385 - -
Mtr3g0580 520 SUPERFAMILY (Trans)glycosidases 38 387 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0580 Mtr-Chr3 7714056 7726824 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0580 3 515 Glycoside Hydrolase AT5G61250 56.827 0.0 646
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0580 K07964 - gmx:100807012 791.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g0580 3 7714056 7726824 Mtr3g0580 3 7714056 7726824 ECH