Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3333 ATGGCCTCCCAAGCAAGCCTCCTCCTTCAAAAACAGCTCAAAGATCTTTGTAAACACCCCGTCGATGGCTTTTCCGCTGGTTTAGTCGACGAAACCAACATTTTTGAATGGAGTGTAACCATAATTGGGCCACCAGATACACTTTATGAGGGAGGATTTTTCAATGCCATTATGAGCTTTCCGTCGAACTATCCAAACAGTCCACCATCAGTGAAGTTCACTTCAGAGATATGGCATCCCAATGTATATCCTGATGGGCGGGTTTGCATATCTATTCTTCATCCTCCTGGGGATGACCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATACAGTCGAGAGTATAGTGTTGAGTATCATATCAATGCTTTCTGGTCCTAATGATGAATCTCCGGCAAATGTTGAAGCTGCGAAGGAGTGGAGAGACAGGAGAGACGATTTCAAGAAAAAGGTTAGCCGGTGTGTGCGGAAGTCACAGGAAATGTTGTGA 501 0.4531 MASQASLLLQKQLKDLCKHPVDGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPSVKFTSEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKKKVSRCVRKSQEML* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3333 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 13 2 166 - -
Mtr2g3333 166 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 164 IPR000608 -
Mtr2g3333 166 Gene3D Ubiquitin Conjugating Enzyme 2 166 IPR016135 -
Mtr2g3333 166 Pfam Ubiquitin-conjugating enzyme 9 158 IPR000608 -
Mtr2g3333 166 SMART ubc_7 7 164 - -
Mtr2g3333 166 CDD UBCc 17 159 IPR000608 -
Mtr2g3333 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 166 - -
Mtr2g3333 166 SUPERFAMILY UBC-like 3 162 IPR016135 -
Mtr2g3333 166 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3333 Mtr-Chr2 47395107 47399672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3333 11 131 Miscellaneous Gene Families AT3G17000 30.769 2.06e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3333 K10575 - jre:109002635 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3333 2 47395107 47399672 Mtr2g3333 2 47395107 47399672 ECH
Mtr2g3333 2 47395107 47399672 Mtr4g1856 4 31675644 31678737 ECH
Mtr2g3333 2 47395107 47399672 Mtr4g1856 4 31675644 31678737 PCT