Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2556 ATGGCTAACCGTAACCTTCCTCCAAGAATCATCAAGGAAACACAGCGTTTGCTCAGTGAGCCAGCGCCTGGAATTAGTGCATCCCCTTCGGAAGACAATATGCGGTATTTCAATGTGATGATCCTTGGCCCAACTCAGTCTCCTTATGAAGGGGGAGTTTTCAAGCTAGAACTATTTTTGCCTGAAGAATATCCAATGGCTGCTCCAAAGGTTAGGTTCTTGACAAAAATATATCATCCTAACATTGACAAGCTTGGCAGGATATGTCTTGATATTCTGAAAGATAAGTGGACTCCTGCCCTCCAGATTCGCACTGTACTTTTGAGCCAAAGATTGGACCAGATTATATGCCAGCGGTGCTTGACAATTTGGTGGATACTTTTGGTCTCAAATAACAATAGTGGAAGTGTATGCTATTAA 420 0.4262 MANRNLPPRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWTPALQIRTVLLSQRLDQIICQRCLTIWWILLVSNNNSGSVCY* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2556 139 Gene3D Ubiquitin Conjugating Enzyme 2 133 IPR016135 -
Mtr2g2556 139 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 110 - -
Mtr2g2556 139 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 139 IPR000608 -
Mtr2g2556 139 SUPERFAMILY UBC-like 9 109 IPR016135 -
Mtr2g2556 139 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 35 2 110 - -
Mtr2g2556 139 CDD UBCc 9 109 IPR000608 -
Mtr2g2556 139 Pfam Ubiquitin-conjugating enzyme 9 109 IPR000608 -
Mtr2g2556 139 SMART ubc_7 8 131 - -
Mtr2g2556 139 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2556 Mtr-Chr2 38412764 38418845 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2556 3 109 Miscellaneous Gene Families AT3G17000 29.825 4.67e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2556 K10580 - oeu:111370828 216.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g2556 2 38412764 38418845 Mtr2g2556 2 38412764 38418845 ECH