Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2089 ATGGAAAACAGTAGTAGTAGGTCGGAGCAGACAGTTGAAGATGGGAAACTGTATAGACACCTCAATTCTCTTATCGTCGCTCATCTTCGTCACAACAATCTCACTCAGGCTGCAACTGCTGTTGCTTCAGCGACCATGACACCATTCAATGTACAAGCTCCGCCCAACAAGCTTCTTCAATTGCTTTCTAAGGGTCTTGCAGCGGAAAAGGATGACTTGCCAAGAGGGATTTCATCTTCTCCTTTTCAAGATTTGGGTGCATCATTGCCCTTGCCTCGTCCCGGTGCAACAACCATTGATTTCAGCTCTTTGTCAGATATAAAAGGTTCGTCAAAAAGTTTCCCAAAGCATGAAACACGACACCTTTCAGAACACAAGAATGTTGCCAGGTGTGCTAGGTTTAGTCCTGATGGAAGATTTGTTGCCACTGGAAGTGCAGATACATCAATAAAACTATTTGAGGTTTCAAAGATCAAGCAGATGTTGCTCCCAGATGCAAAGGATGGTCCTGTGCGGTCTGTAGTAAAAACATATTATGACCATATACAGCCAGTAAATGATCTGGATTTTAATCCGCAAGGTACTATCCTGGTTTCTGGAGCCAAAGATCAGACAATAAAGTTTTTTGATATTTCAAAAACCAACGCCAAGAGGTCATACAGGGTTATCCAGGACACGCACAATGTTCGCTCTGTATCTTTTCACCCCTCAGGAGACTTTCTGTTAGCAGGCACTGATCATGCAATTCCACATTTGTATGATATAAATACCTTTCAGTGCTATCTGTCAGCAAATATCCCAGATGCTAACCCTAATGGAGCCATCAACCAGGTTAGATATTCTTGTTCAGGTTCCATGTATGTTACAGCATCGAAAGATGGTGCGATTCGGTTGTGGGATGGCATCACTGCCAATTGTGTGCGCTCAATAACTGCAGCACATGGAACAGCAGAGGCTACTAGTGCAGTTTTTACAAGCGATCAAAGGTTTGTCCTCTCCTGTGGGAAGGATTCTACCATAAAGCTTTGGGAGGTTGGCTCAGGCAGATTAGTCAAACAATATCTCGGCGCCATACACACACAACTGAGATGTCAGGCTATTTTCAATGCAACAGAAGAATTTATTCTCTCCATAGATGAACTGAACAACGAGGTCATTATCTGGGATGCGATGACAACAGAAATAGTAGCGAAATGGCCTTCTAATCATGTTGGTGCACCGCGCTGGCTTGACCACTCCCCTGTAGAGTCTGCTTTTATTTCATGTGGAACTGATAGATCAATTCGATTCTGGAAGGAGGTTTAA 1305 0.4345 MENSSSRSEQTVEDGKLYRHLNSLIVAHLRHNNLTQAATAVASATMTPFNVQAPPNKLLQLLSKGLAAEKDDLPRGISSSPFQDLGASLPLPRPGATTIDFSSLSDIKGSSKSFPKHETRHLSEHKNVARCARFSPDGRFVATGSADTSIKLFEVSKIKQMLLPDAKDGPVRSVVKTYYDHIQPVNDLDFNPQGTILVSGAKDQTIKFFDISKTNAKRSYRVIQDTHNVRSVSFHPSGDFLLAGTDHAIPHLYDINTFQCYLSANIPDANPNGAINQVRYSCSGSMYVTASKDGAIRLWDGITANCVRSITAAHGTAEATSAVFTSDQRFVLSCGKDSTIKLWEVGSGRLVKQYLGAIHTQLRCQAIFNATEEFILSIDELNNEVIIWDAMTTEIVAKWPSNHVGAPRWLDHSPVESAFISCGTDRSIRFWKEV* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2089 434 CDD WD40 118 432 - -
Mtr2g2089 434 ProSiteProfiles Trp-Asp (WD) repeats profile. 122 163 IPR001680 GO:0005515
Mtr2g2089 434 SUPERFAMILY WD40 repeat-like 114 432 IPR036322 GO:0005515
Mtr2g2089 434 PRINTS G protein beta WD-40 repeat signature 197 211 IPR020472 -
Mtr2g2089 434 PRINTS G protein beta WD-40 repeat signature 287 301 IPR020472 -
Mtr2g2089 434 PRINTS G protein beta WD-40 repeat signature 331 345 IPR020472 -
Mtr2g2089 434 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 268 300 - -
Mtr2g2089 434 Pfam WD domain, G-beta repeat 305 343 IPR001680 GO:0005515
Mtr2g2089 434 Pfam WD domain, G-beta repeat 226 249 IPR001680 GO:0005515
Mtr2g2089 434 Pfam WD domain, G-beta repeat 174 210 IPR001680 GO:0005515
Mtr2g2089 434 Pfam WD domain, G-beta repeat 273 300 IPR001680 GO:0005515
Mtr2g2089 434 Pfam WD domain, G-beta repeat 119 153 IPR001680 GO:0005515
Mtr2g2089 434 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 122 156 - -
Mtr2g2089 434 Gene3D - 106 433 IPR015943 GO:0005515
Mtr2g2089 434 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 353 IPR001680 GO:0005515
Mtr2g2089 434 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 8 433 IPR044633 GO:0005848|GO:0031124
Mtr2g2089 434 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 178 212 - -
Mtr2g2089 434 SMART WD40_4 392 432 IPR001680 GO:0005515
Mtr2g2089 434 SMART WD40_4 257 300 IPR001680 GO:0005515
Mtr2g2089 434 SMART WD40_4 171 210 IPR001680 GO:0005515
Mtr2g2089 434 SMART WD40_4 303 344 IPR001680 GO:0005515
Mtr2g2089 434 SMART WD40_4 115 154 IPR001680 GO:0005515
Mtr2g2089 434 SMART WD40_4 216 254 IPR001680 GO:0005515
Mtr2g2089 434 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 309 IPR001680 GO:0005515
Mtr2g2089 434 ProSiteProfiles Trp-Asp (WD) repeats profile. 178 219 IPR001680 GO:0005515
Mtr2g2089 434 ProSitePatterns Trp-Asp (WD) repeats signature. 331 345 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2089 Mtr-Chr2 31238961 31246760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2089 175 431 Miscellaneous Gene Families AT5G08390 22.093 8.83e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2089 K14406 - gmx:100809908 753.436