Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1547 ATGGAGACACCACCCTCAACCGGCGCCGTGAAGAAGAAGGAGACAAGAGGACGCAAACCTAAACCCAAGGAAGACAAGAGAGAAGAACCATCACAAGTGAAGTCACCGAGAGAATCGAAGAAGGAAAAGCAACAGCAACAGCTTCATCAGCAGCAGCAACAACAAGCTTCTGTTGATGAGAAGTACTCTCAATGGAAATCTCTTGTTCCTGTTCTTTATGATTGGCTTGCTAATCATAACCTCGTTTGGCCTTCTCTCTCTTGCCGGTGGGGTCCTCAGCTTGAACAGGCTACTTACAAGAATCGTCAGAGGCTTTATCTTTCGGAGCAGACTGATGGAAGTGTTCCGAATACTTTGGTGATTGCGAATTGTGAGGTTGTGAAGACTAGGGTTGCAGCTGCTGAACACATTTCTCAGTTTAATGAAGAGGCTCGCTCTCCATTTGTCAAGAAGTACAAGACTATCATACATCCAGGCGAGGTGAACAGAATTAGGGAATTGCCACAAAATTCTAAGATTGTGGCCACTCACACAGACAGCCCTGATGTTCTCATTTGGGATGTTGAAAGTCAACCTAACCGTCATGCTGTCCTTGGAGCTACAAACTCTCGTCCAGATCTGATATTGACTGGACACCAAGATAATGCAGAGTTTGCTCTTGCAATGTGCCCTACTCAGCCCTATGTGCTTTCTGGAGGAAAAGACAAAACAGTCGTGTTGTGGAGTATTGAAGACCATATAACATCTGCTGCTACAGACTCCAACAAGTCTGGTGGATCCATTGCCAAAACTGCTGATAGCCCTACTGTCGGACCAAGAGGTATCTACTCTGGGCATGAGGATACTGTTGAAGACGTGGCTTTTTGCCCTTCTAGTGCGCAGGAGTTCTGTAGTGTTGGAGATGATTCTTGTCTCATATTATGGGATGCACGTGTTGGCTCTAGTCCTGTGGTTAAGGTTGAAAAAGCTCATGATGCTGATCTTCACTGTGTTGACTGGAATCCCCATGATGATAATCTGATTCTTACTGGGTCGGCAGATAATTCTATTCGCATGTTTGATCGTCGCAATCTCACTTCTAATGGGGTTGGGTCTCCTATCCACAAATTTGAGGCTCATAAGGCTGCTGTCCTTTGTGTTCAGTGGTCTCCAGACAAATCATCTGTATTTGGAAGTTCAGCAGAAGATGGTCTCCTGAACATTTGGGATTATGAGAAGGTTGGCAAGAAGATAGAGCGAGCTGGAAAAACAATAAATTCTCCTCCAGGGTTGTTTTTCCAACATGCTGGTCATAGAGACAAAGTTGTTGACTTTCACTGGAATGCACATGATCCATGGACACTTGTTAGTGTGTCTGATGATTGCGAAAGTACTGGTGGAGGGGGAACATTGCAGATATGGCGCATGAGTGATTTGCTCTACAGACCAGAGGATGAGGTTTTGGCAGAGCTGGAGAAATTCAAATCTCATGTGGTGGCTTGTGCAGCAAAGACCGACAAATAA 1503 0.4524 METPPSTGAVKKKETRGRKPKPKEDKREEPSQVKSPRESKKEKQQQQLHQQQQQQASVDEKYSQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKTRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVESQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTQPYVLSGGKDKTVVLWSIEDHITSAATDSNKSGGSIAKTADSPTVGPRGIYSGHEDTVEDVAFCPSSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHDADLHCVDWNPHDDNLILTGSADNSIRMFDRRNLTSNGVGSPIHKFEAHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERAGKTINSPPGLFFQHAGHRDKVVDFHWNAHDPWTLVSVSDDCESTGGGGTLQIWRMSDLLYRPEDEVLAELEKFKSHVVACAAKTDK* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1547 500 ProSiteProfiles Trp-Asp (WD) repeats profile. 321 354 IPR001680 GO:0005515
Mtr2g1547 500 Coils Coil 41 61 - -
Mtr2g1547 500 SUPERFAMILY WD40 repeat-like 147 494 IPR036322 GO:0005515
Mtr2g1547 500 Gene3D - 35 486 IPR015943 GO:0005515
Mtr2g1547 500 MobiDBLite consensus disorder prediction 7 45 - -
Mtr2g1547 500 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 370 405 - -
Mtr2g1547 500 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 60 126 IPR022052 -
Mtr2g1547 500 ProSiteProfiles Trp-Asp (WD) repeats profile. 370 405 IPR001680 GO:0005515
Mtr2g1547 500 MobiDBLite consensus disorder prediction 251 272 - -
Mtr2g1547 500 PANTHER WD40 REPEAT FAMILY 37 497 - -
Mtr2g1547 500 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 321 354 - -
Mtr2g1547 500 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI4 37 497 - -
Mtr2g1547 500 MobiDBLite consensus disorder prediction 1 59 - -
Mtr2g1547 500 Pfam WD domain, G-beta repeat 207 242 IPR001680 GO:0005515
Mtr2g1547 500 Pfam WD domain, G-beta repeat 274 309 IPR001680 GO:0005515
Mtr2g1547 500 Pfam WD domain, G-beta repeat 322 354 IPR001680 GO:0005515
Mtr2g1547 500 Pfam WD domain, G-beta repeat 364 403 IPR001680 GO:0005515
Mtr2g1547 500 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 318 IPR001680 GO:0005515
Mtr2g1547 500 SMART WD40_4 269 309 IPR001680 GO:0005515
Mtr2g1547 500 SMART WD40_4 314 354 IPR001680 GO:0005515
Mtr2g1547 500 SMART WD40_4 202 242 IPR001680 GO:0005515
Mtr2g1547 500 SMART WD40_4 363 403 IPR001680 GO:0005515
Mtr2g1547 500 SMART WD40_4 148 187 IPR001680 GO:0005515
Mtr2g1547 500 SMART WD40_4 421 468 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1547 Mtr-Chr2 17223219 17230489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1547 155 407 Miscellaneous Gene Families AT5G08390 22.878 1.21e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1547 K10752 - gmx:100779302 906.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g1547 2 17223219 17230489 Mtr2g1547 2 17223219 17230489 ECH