Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1466 ATGGCAACAGAGAGTCCAATTAGAATCTCAGAAGCTGGGGGGAAATGGCCTTCTCATATGGAAGCTTCAGCTTATGGCACACCGCCTCGTAACATGGGGGCAGAGGATTTGGGTGTACTGTTGAAGGGCCATAGGTTCCGTGGTAGTGGAAAGGATGCGGCACCCAGTCGTAGTGGCAGTGCACCTCCCAGCATGGAAGGCTCATTTCTGGCCATAGAAAACCTATTGCCACTGCAGAACACCCAGGATGCAAGCTTGACAGGTCTGAGCAGAGCTGTGAAAAATTGTGAATCTGAAGAACAGTTACGAGCTGATCCAGCTTATTTGGCATATTACAATTCCAATGTCAACCTAAACCCTAGACTTCCTCCCCCACTGACTTCCTGGGAAAATCGCCATACAGGGCATCGTGTTGGTAGTTCAGGAAACAATTGGGGACTGTCTTCTATAGATCATAGAAGTAAAAGTTCTTTACATTTACCGCAAGCAACTCTTTCTACACACAAGGAGGAGTCTGAGGATGATTCACCCCAACAACAGGCACATGAAAATGAATTAGTGAACACAAGTGGAGTATGGCGGAGACAGGATGCAGCTTCATTGGCACCACAGCCAAAAAATATGGTTGATTTAATTCAGGAAGATTTTCCTCGCACGATGTCACCTGTATATAATATGTCTCTTTCTGCAAGTCATCGACTGGGGGATAAACCAATTGAATTAGAAGCTGGTTCCAGATCTTCTCATGACGCTCATGATACTGCAGTAGAGTCTGCTAAATCTACTGCAGGCGCGGATGATATTAGGGTGTCATCAAGTGTCGATGTCCACACCCCTGTTGCAAGCTCTTCAACATTTGAACCCACAGCTAGCATGGGTTTTAGTAACTTAGATGCTGCAACTGTTGCATCTCAATTAAATACACTTAGTGTATCTAATTTGCCGAATTCTGAAAACCTGAGTTATGAAGAAAAATTGATGACCAGCTACCAGAACAATATGATGCAACGGCAGGTATTCGCGCAACAAAGCTATCCGTATGAAGTTCCTAGTGCCAATTCTCAAAGTGTAAACCCTGCCTACGTTGGCAGGGAACAGTTTCCTCATAATTCAAGCAAGTTGCCTGATGTCCAGCCACTACTTCAGTCCTCAGGGTTTACACCTCCCCTATATGCCACAGCTGCAGCTTACATGGCCTCTGTAAATCCATTTTACAATAATATGCAGGCCTCAGGCCCATACACTCCTCAATATGTTGGTGGATACACTTTAAATCCCACCGCGGTTCAGCCTTATATTTCTGCATACCCTCCTCATGGTGCTGTACCATTTGTTGTTGATGGGGCTACTAGTTCTAGCTATGCTCCGCTAACACCAGGGGTTTCAACCGGGGGTAATATTTCGCATGGAGCTGAAATGGTACATGCAAACAAGTACCTTGGGCAATTTGGATTTCCTGTACAGCCTTCTTTTGGCGATCCTATTTACATGCAATATAATCAGCAACCTTTTGTGGAGGGATATGGTATTTCTGGTCATTTTGATCCACAGGCACCTAGAGCAAGTGTTGTTCAAATAAATCCTTATGATTCACAAAAAAGGCCTGGTACTGGTGCTTATTTGGATGATAAAAAATTACATGAACAGAGAACTGGTGCTAGTATGAACTCAAGAAGAGGTGGACTGCCGGTTCCTAATTATTTTGGACATGTGCCAAACACGGGCTTTGTAATGCAGTATCCAGGTTCACCACTTCCCAGTCCAGTTTTATCTGGATATCCAGATGGAAGTCCCGGCCTTTCAGGAGGTAGAAATGAAATAAAACCTTCCCCAGCTTCTGGTAGAAATGGAGGCATGGTAACTGGATGGTATGGTCCAAGATCCTTTGACAGTGGTCAAGACCCCAAGATTGTTAACTTCCTTGAAGAGTTGAAATCTGGCAAAGGTCGCAGATTTGAGCTATCCGATATAATTGGACATATTGTTGAATTTAGCTCTGATCAGCATGGAAGTCGATTTATACAACAGAAGCTGGAAAGTTGTGGTGCTGAAGAGAAGGCATTGGTGTTCAAAGAGGTTCTTCCACATGCTTCTAAGTTAATGACTGATGTATTCGGTAACTACGTAATACAGAAGTTTTTCGAGTATGGAAACCCTGAGCAGAGGAAGGAACTTGCAGAAAAACTGGCTGGTCAGATACTGCCTTTGAGTCTACAGATGTATGGATGTCGTGTAATCCAAAAGGCACTCGAGGTTATTGAGCATGAACAGAAAGCTCAGCTTGTTCGTGAGCTGGATGGAAATATCATGAGATGTGTTCGTGACCAAAATGGGAATCATGTAATACAGAAGTGCATTGAATCGATCCCGACAAACAAAATTGGCTTTATACTATCTGCATTTCGTGGTCAAGTTGCTAATTTATCAATGCATCCTTATGGTTGTCGAGTCATCCAGAGAATTCTAGAGCATTGTACAGACGAAGTTCAGTGTCAGTTTATTGTGGATGAAATCTTGGAGTCAGTTTGTTCTCTTGCTCAGGACCAGTATGGTAATTATGTTACCCAGCATGTGTTGGAGAGAGGTAGACCTCAAGAAAGGAGCCAAATTATTAGCAAGCTGTCAGGACATGTTGTTCAGTTAAGCCAGCATAAGTTTGCTTCGAATGTTGTGGAGAAATGTCTGGAGTATGGTGACGCCTCTGAGCGGGAAGTGTTAATTGTGGAGATTATTGCGCATGATGAGCAAAATGACAATTTATTGACAATGATGAAAGATCAATTTGCAAATTATGTGATCCAGAAGGTTATTGATATCTGTTCTGAAAATCAGCGAGCAAGGTTACTTTCACACATAAGAGCTCATGCTAATGCTTTGAAGAAATACACTTATGGAAAACACATTGTGGCTCGTATGGAACATCAATTTGGAGAGAATCAAGCACCCAGTTCATGA 2955 0.4311 MATESPIRISEAGGKWPSHMEASAYGTPPRNMGAEDLGVLLKGHRFRGSGKDAAPSRSGSAPPSMEGSFLAIENLLPLQNTQDASLTGLSRAVKNCESEEQLRADPAYLAYYNSNVNLNPRLPPPLTSWENRHTGHRVGSSGNNWGLSSIDHRSKSSLHLPQATLSTHKEESEDDSPQQQAHENELVNTSGVWRRQDAASLAPQPKNMVDLIQEDFPRTMSPVYNMSLSASHRLGDKPIELEAGSRSSHDAHDTAVESAKSTAGADDIRVSSSVDVHTPVASSSTFEPTASMGFSNLDAATVASQLNTLSVSNLPNSENLSYEEKLMTSYQNNMMQRQVFAQQSYPYEVPSANSQSVNPAYVGREQFPHNSSKLPDVQPLLQSSGFTPPLYATAAAYMASVNPFYNNMQASGPYTPQYVGGYTLNPTAVQPYISAYPPHGAVPFVVDGATSSSYAPLTPGVSTGGNISHGAEMVHANKYLGQFGFPVQPSFGDPIYMQYNQQPFVEGYGISGHFDPQAPRASVVQINPYDSQKRPGTGAYLDDKKLHEQRTGASMNSRRGGLPVPNYFGHVPNTGFVMQYPGSPLPSPVLSGYPDGSPGLSGGRNEIKPSPASGRNGGMVTGWYGPRSFDSGQDPKIVNFLEELKSGKGRRFELSDIIGHIVEFSSDQHGSRFIQQKLESCGAEEKALVFKEVLPHASKLMTDVFGNYVIQKFFEYGNPEQRKELAEKLAGQILPLSLQMYGCRVIQKALEVIEHEQKAQLVRELDGNIMRCVRDQNGNHVIQKCIESIPTNKIGFILSAFRGQVANLSMHPYGCRVIQRILEHCTDEVQCQFIVDEILESVCSLAQDQYGNYVTQHVLERGRPQERSQIISKLSGHVVQLSQHKFASNVVEKCLEYGDASEREVLIVEIIAHDEQNDNLLTMMKDQFANYVIQKVIDICSENQRARLLSHIRAHANALKKYTYGKHIVARMEHQFGENQAPSS* 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1466 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 656 691 IPR001313 GO:0003723
Mtr2g1466 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 692 727 IPR001313 GO:0003723
Mtr2g1466 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 909 950 IPR001313 GO:0003723
Mtr2g1466 984 PANTHER PUMILIO HOMOLOG 5 45 977 - -
Mtr2g1466 984 MobiDBLite consensus disorder prediction 127 150 - -
Mtr2g1466 984 Gene3D - 637 981 IPR011989 -
Mtr2g1466 984 MobiDBLite consensus disorder prediction 597 619 - -
Mtr2g1466 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 728 763 IPR001313 GO:0003723
Mtr2g1466 984 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 636 976 IPR033133 GO:0003723
Mtr2g1466 984 MobiDBLite consensus disorder prediction 133 150 - -
Mtr2g1466 984 MobiDBLite consensus disorder prediction 1 65 - -
Mtr2g1466 984 SMART pum_5 656 691 IPR001313 GO:0003723
Mtr2g1466 984 SMART pum_5 915 950 IPR001313 GO:0003723
Mtr2g1466 984 SMART pum_5 692 727 IPR001313 GO:0003723
Mtr2g1466 984 SMART pum_5 837 872 IPR001313 GO:0003723
Mtr2g1466 984 SMART pum_5 800 836 IPR001313 GO:0003723
Mtr2g1466 984 SMART pum_5 873 908 IPR001313 GO:0003723
Mtr2g1466 984 SMART pum_5 728 763 IPR001313 GO:0003723
Mtr2g1466 984 SMART pum_5 764 799 IPR001313 GO:0003723
Mtr2g1466 984 MobiDBLite consensus disorder prediction 164 193 - -
Mtr2g1466 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 873 908 IPR001313 GO:0003723
Mtr2g1466 984 Pfam Pumilio-family RNA binding repeat 877 911 IPR001313 GO:0003723
Mtr2g1466 984 Pfam Pumilio-family RNA binding repeat 804 839 IPR001313 GO:0003723
Mtr2g1466 984 Pfam Pumilio-family RNA binding repeat 732 765 IPR001313 GO:0003723
Mtr2g1466 984 Pfam Pumilio-family RNA binding repeat 775 790 IPR001313 GO:0003723
Mtr2g1466 984 Pfam Pumilio-family RNA binding repeat 919 952 IPR001313 GO:0003723
Mtr2g1466 984 Pfam Pumilio-family RNA binding repeat 697 729 IPR001313 GO:0003723
Mtr2g1466 984 Pfam Pumilio-family RNA binding repeat 842 874 IPR001313 GO:0003723
Mtr2g1466 984 Pfam Pumilio-family RNA binding repeat 660 694 IPR001313 GO:0003723
Mtr2g1466 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 837 872 IPR001313 GO:0003723
Mtr2g1466 984 CDD Pumilio 651 972 IPR033712 GO:0003723
Mtr2g1466 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 764 799 IPR001313 GO:0003723
Mtr2g1466 984 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 45 977 - -
Mtr2g1466 984 MobiDBLite consensus disorder prediction 166 180 - -
Mtr2g1466 984 MobiDBLite consensus disorder prediction 243 266 - -
Mtr2g1466 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 800 836 IPR001313 GO:0003723
Mtr2g1466 984 SUPERFAMILY ARM repeat 641 973 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1466 Mtr-Chr2 16129103 16140227 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1466 K17943 - gmx:100811036 1587.01