Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1456 ATGCTTCAATCATCAATGGAAGGTACCCTCTTCCCTAATAGACCAGTTCTTCCACTCCCCACTAAAAAACCAACCCAAGCATTGAAATTCAAACCAACATTTTCACATTCTCCACCACCAACACCATCACAACAATCACAATCACAAACACAAACACCACCTTCATTTCCCATAGATTCTCTTCTTCATCATCTCAAACACCTTTCTTCAACTCCTATAATCACTCACACACAAACACTTGTCCCTAATAACAATAACAATAACACCCATTTCACTTCTCTCCAAATTCAACTTGATGAAAAAGATGAAAATCTTCAACAGGGTCATACAAAACGACCCACTTCGTCTTCTGTTGATTATAACCATTTTGATGATGTAAAGTTTGGATTTTTATCGGGAAAAAGTAAGTTTATGCTGAATTGCATTGTTGGGTCGTCTTTGAATGACTTGATTGAGTTTTTCAACTCTGTGAAAGGTGAGTTACTTGAATCTGATATTACTGGTTTGTTGAAGGGTTTGGATCTTTCTGGGAATTGGGAGAGAGCTTTTTTGTTGTTTGAATGGGTTTGGTTGAATTTTGGGTCTGAAAATATGAAGGTGGATGATCAATCTGTTGAATTTATGGTTAAGATGTTAGGTAGAGAATCACAATATTCAATTGCTTCTAAGTTGTTTGATATAATTCCTGTTGAAGAATATTCACTTGATGTTAAGGCTTGTACTACTGTTCTTCATGCTTATGCGCGAACCGGGAAGTATAAACGGGCTATTGAGATTTTTGAGAAGATGAAGGAGACTGGTCTTGATCCAACTTTGGTTACTTACAATGTTATGCTTGATGTTTATGGGAAGATGGGTCGGGCTTGGAGTATGATTTTGGAGTTGTTGGATGAGATGAGGAGTAAAGGGCTTGAGTTTGATGAGTTTACGTGTACCACTGTGATATCTGCTTGTGGGAGAGAGGGTATACTTGATGAAGCAAGGAGGTTTTTTGATGATTTGAAATTGAATGGATATAAACCGGGAACGGCTACATATAACTCGATGTTGCAGGTTTTTGGGAAGGCTGGAGTTTACACAGAGGCATTGAACATCTTAAAAGAAATGGAGGATAATAATTGTGAGCCGGATGCTATTACTTACAATGAGCTTGTGGCAGCGTATGTAAGAGCCGGGTTTCATGATGAAGGGGCTGCTGTCATTGATACAATGGCAAGTAAAGGAGTTATGCCGAATGCTATTACGTATACTACTGTGATAAATGCCTATGGTAAGGCGGGAGATGCAGACAAGGCGTTAGAGGTGTTTGGTCAGATGAAGGAGTTGGGATGTGTTCCTAATGTATGCACGTATAACAATGTTCTTGTGTTGCTAGGCAAGAGGTCAAGATCAGAAGACATGATTAAGATTCTCTGCGACATGAAATTGAATGGTTGTCCTCCTGATCGCATAACATGGAACACGATGCTTGCTGTATGTGGTGAGAAGGGTAAGCAAAAATTTGTTAGCCAGGTTTTAAGGGAAATGAAAAACTGTGGCTTTGAGCCTGACAAAGAGACGTTCAATACATTAATTAGTGCCTATGGTCGGTGTGGATCCGAAGTTGATGTTGCAAAAATGTACGGTGAAATGGTTGCTGCAGGATTTACTCCATGCATAACAACTTACAATGCTCTTCTAAACGCTCTTGCGAGGCGAGGCAATTGGAAAGCGGCCGAATCAGTCGTTCTCGACATGCGGAAAAAGGGATTTAAGCCTAATGAAACTTCGTACTCACTTTTGCTTCATTGTTATTCTAAAGCTGGGAATGTCAGGGGTTTAGAGAAGGTTGAGATGGAAATTTATGATGGTCACGTCTTTCCTAGCTGGATGCTTTTGAGAACCCTTGTCCTTACAAACTACAAGTGCAGACAGCTTAAGGGAATGGAAAGGGCATTTCATCAGTTGCAAAATAATGGATACAAACTCGATATGGTTGTGATTAACTCCATGCTTTCGATGTTTGTCCGAAACCAGAAGCTCGAGAAGGCTCATGAAATGTTAGATGTCATTCACGTAAGCGGGTTGCAGCCGAATCTTGTGACATATAATAGCTTGATAGACTTGTATGCCCGAGTTGGCGATTGTTGGAAAGCAGAAGAAATGCTCAAGGATATTCAAAACTCCGGTATAAGTCCAGACGTTGTGTCGTACAATACCGTCATCAAAGGATTTTGTAAAAAAGGGCTCGTGCAGGAAGCTATAAGAATTCTTTCAGAGATGACCGCTAATGGAGTTCAACCATGTCCTATTACATTCAATACTTTCATGTCATGCTATGCAGGGAATGGGCTTTTTGCTGAAGCAGATGAAGTCATTAGATATATGATTGAACATGGTTGCATGCCAAATGAGCTAACTTACAAGATTGTAATTGATGGTTATATTAAAGCAAAAAAACATAAAGAAGCAATGGACTTTGTGTCTAAGATTAAAGAGATTGATATCTCTTTCGATGATCAATCTTTAAAAAAGCTAGCTTCTTGCATTAGGGAGAGTTTGGGGTCTTGA 2550 0.3949 MLQSSMEGTLFPNRPVLPLPTKKPTQALKFKPTFSHSPPPTPSQQSQSQTQTPPSFPIDSLLHHLKHLSSTPIITHTQTLVPNNNNNNTHFTSLQIQLDEKDENLQQGHTKRPTSSSVDYNHFDDVKFGFLSGKSKFMLNCIVGSSLNDLIEFFNSVKGELLESDITGLLKGLDLSGNWERAFLLFEWVWLNFGSENMKVDDQSVEFMVKMLGRESQYSIASKLFDIIPVEEYSLDVKACTTVLHAYARTGKYKRAIEIFEKMKETGLDPTLVTYNVMLDVYGKMGRAWSMILELLDEMRSKGLEFDEFTCTTVISACGREGILDEARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNELVAAYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMKELGCVPNVCTYNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEMVAAGFTPCITTYNALLNALARRGNWKAAESVVLDMRKKGFKPNETSYSLLLHCYSKAGNVRGLEKVEMEIYDGHVFPSWMLLRTLVLTNYKCRQLKGMERAFHQLQNNGYKLDMVVINSMLSMFVRNQKLEKAHEMLDVIHVSGLQPNLVTYNSLIDLYARVGDCWKAEEMLKDIQNSGISPDVVSYNTVIKGFCKKGLVQEAIRILSEMTANGVQPCPITFNTFMSCYAGNGLFAEADEVIRYMIEHGCMPNELTYKIVIDGYIKAKKHKEAMDFVSKIKEIDISFDDQSLKKLASCIRESLGS* 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1456 849 PANTHER OS03G0856100 PROTEIN 6 845 - -
Mtr2g1456 849 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Mtr2g1456 849 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 762 796 IPR002885 -
Mtr2g1456 849 Pfam PPR repeat 723 755 IPR002885 -
Mtr2g1456 849 Gene3D Tetratricopeptide repeat domain 512 616 IPR011990 GO:0005515
Mtr2g1456 849 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 727 761 IPR002885 -
Mtr2g1456 849 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Mtr2g1456 849 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 657 691 IPR002885 -
Mtr2g1456 849 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 692 726 IPR002885 -
Mtr2g1456 849 SUPERFAMILY HCP-like 245 443 - -
Mtr2g1456 849 TIGRFAM PPR: pentatricopeptide repeat domain 520 551 IPR002885 -
Mtr2g1456 849 TIGRFAM PPR: pentatricopeptide repeat domain 345 378 IPR002885 -
Mtr2g1456 849 TIGRFAM PPR: pentatricopeptide repeat domain 659 692 IPR002885 -
Mtr2g1456 849 TIGRFAM PPR: pentatricopeptide repeat domain 273 307 IPR002885 -
Mtr2g1456 849 TIGRFAM PPR: pentatricopeptide repeat domain 239 271 IPR002885 -
Mtr2g1456 849 TIGRFAM PPR: pentatricopeptide repeat domain 729 761 IPR002885 -
Mtr2g1456 849 TIGRFAM PPR: pentatricopeptide repeat domain 379 413 IPR002885 -
Mtr2g1456 849 TIGRFAM PPR: pentatricopeptide repeat domain 484 517 IPR002885 -
Mtr2g1456 849 TIGRFAM PPR: pentatricopeptide repeat domain 414 448 IPR002885 -
Mtr2g1456 849 TIGRFAM PPR: pentatricopeptide repeat domain 694 728 IPR002885 -
Mtr2g1456 849 TIGRFAM PPR: pentatricopeptide repeat domain 555 588 IPR002885 -
Mtr2g1456 849 TIGRFAM PPR: pentatricopeptide repeat domain 764 798 IPR002885 -
Mtr2g1456 849 TIGRFAM PPR: pentatricopeptide repeat domain 309 342 IPR002885 -
Mtr2g1456 849 TIGRFAM PPR: pentatricopeptide repeat domain 449 482 IPR002885 -
Mtr2g1456 849 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 797 831 IPR002885 -
Mtr2g1456 849 MobiDBLite consensus disorder prediction 40 57 - -
Mtr2g1456 849 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 411 IPR002885 -
Mtr2g1456 849 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 482 516 IPR002885 -
Mtr2g1456 849 Gene3D Tetratricopeptide repeat domain 394 511 IPR011990 GO:0005515
Mtr2g1456 849 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Mtr2g1456 849 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 517 551 IPR002885 -
Mtr2g1456 849 Pfam PPR repeat family 762 809 IPR002885 -
Mtr2g1456 849 Pfam PPR repeat family 341 388 IPR002885 -
Mtr2g1456 849 Pfam PPR repeat family 551 599 IPR002885 -
Mtr2g1456 849 Pfam Pentatricopeptide repeat domain 469 529 IPR002885 -
Mtr2g1456 849 Pfam Pentatricopeptide repeat domain 646 703 IPR002885 -
Mtr2g1456 849 Pfam Pentatricopeptide repeat domain 400 461 IPR002885 -
Mtr2g1456 849 Pfam Pentatricopeptide repeat domain 235 285 IPR002885 -
Mtr2g1456 849 Pfam PPR repeat 309 338 IPR002885 -
Mtr2g1456 849 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Mtr2g1456 849 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 552 586 IPR002885 -
Mtr2g1456 849 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 481 IPR002885 -
Mtr2g1456 849 PANTHER - 6 845 - -
Mtr2g1456 849 MobiDBLite consensus disorder prediction 1 59 - -
Mtr2g1456 849 Gene3D Tetratricopeptide repeat domain 743 846 IPR011990 GO:0005515
Mtr2g1456 849 Gene3D Tetratricopeptide repeat domain 286 393 IPR011990 GO:0005515
Mtr2g1456 849 Gene3D Tetratricopeptide repeat domain 143 285 IPR011990 GO:0005515
Mtr2g1456 849 Gene3D Tetratricopeptide repeat domain 624 742 IPR011990 GO:0005515
Mtr2g1456 849 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 306 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1456 Mtr-Chr2 15951319 15955102 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1456 264 826 Glycosyltransferase AT1G05670 24.558 1.82e-52 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1456 K17710 - gmx:100803889 1221.45