Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1417 ATGAAAAAACTCCAATTATTCATCATTCTTCTTTGCATAGCCTTATTATTACACGTTTCTCTCCCGTCACATTCATTTCTCCATCTTCATTCAACACACGTCTCTTGCATTGCTTCCCTTATTACACTTCCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATCCTCTTCATTAAGATGGCAGCATCATTGGCATGCCTTGTTGGGAGTGGTTTAACTACACAAAGTAATAAAATGACGCTTGGCAAGGACTTAAATGGAAGACGTCTCTTACTTTCTCGGAGACATTCATCATCGAGGAGGGCATCAAAAACTATATTAGTAAAGGCATTGTTAGATCAAAGTGAACACAAAGGAAGAAGGGGATTTCTGAAATTGTTGAACACCACAGTTGGCTTATCTGCATTATTAGGAAGCGCGAATGCTAATGCTGATGAACAAGGCGTTTCCTCATCTAAAATGTCTTATTCTAGGTTTCTTGAGTATTTGGACAAAGACAGGGTTAAAAAAGTTGATCTGTTTGAGAATGGAACTATAGCTATTGTCGAGGCTGTTTCTCCCGAGTTAGGTAATAGGGTGCAGCGAGTGCGGGTTCAACTCCCCGGACTTAACCAAGAACTCCTTCAGAAATTCAGGACAAAGAACATCGACTTTGCAGCTCATAATGCTCAAGAAGAGTCAGATTCCTTCTTTTCCAACCTGATTGGAAATCTCGCTTTCCCTTTAATTGTTATTGGAGGATTGTTCCTTCTCTCACGACGTTCATCTGGAGGGACGGGAGGTCCCGGTGGGTCTGGTTTATTTGGTTTTGGTCAATCTAAGGCCAAATTTCAAATGGAACCAAATACTGGAGTGACATTTGACGATGTTGCCGGGGTAGATGAAGCCAAGCAGGATTTTATGGAGGTAGTGGAGTTTCTAAAAAAGCCTGAGAGGTTCACTGCTATTGGGGCTCGCATACCAAAAGGGGTTCTTCTCATTGGTCCCCCAGGAACTGGGAAGACACTATTAGCTAAGGCTATTGCCGGTGAAGCAGGTGTCCCATTTTTCTCAATCTCAGGTTCTGAGTTTGTTGAGATGTTTGTCGGTATTGGTGCTTCTCGAGTTCGCGATTTATTCAAAAAGGCCAAAGAGAACGCTCCTTGTATTGTTTTTGTTGATGAAATTGATGCTGTGGGAAGGCAACGAGGCACTGGAATTGGTGGAGGGAACGATGAAAGAGAACAGACCCTCAACCAACTTTTGACAGAAATGGATGGATTCGAGGGTAATACTGGAATCATTGTCATTGCAGCAACCAACAGGGCTGATATTCTTGACTCTGCTTTATTGAGACCGGGACGTTTTGATAGACAGGTATCAGTTGACGTTCCAGATATTCGAGGAAGGACTGAAATACTAAAGGTTCATGGTAACAATAAAAAGTTTGATGGTGATGTGTCTCTTGAGGTAGTTGCCATGAGAACACCTGGCTTCAGTGGAGCTGATCTTGCAAACCTCTTGAATGAAGCTGCTATATTAGCTGGACGGCGTGGAAAGGCGGGGATTTCATCAAAAGAGATTGATGATTCTATTGATAGGATTGTGGCTGGAATGGAAGGTACCGTGATGACAGACGGGAAGAGCAAAAGTTTAGTGGCATATCATGAAGTTGGGCATGCCATTTGCGGAACATTGACTCCTGGTCACGATCCTGTACAAAAGGTAACCCTAGTTCCACGTGGTCAAGCTCGGGGTCTTACTTGGTTCATTCCTTCTGACGACCCAACTCTAATCTCCAAACAACAACTCTTTGCAAGAATTGTTGGTGGACTCGGCGGCAGAGCTGCGGAGGAAATTATTTTTGGTGAGCCTGAAGTTACAACTGGAGCGGCTGGTGATTTGCAGCAAATAACCGGTTTGGCTAAACAGATGGTAACCACATTTGGAATGTCTGATATTGGTCCTTGGTCACTTATGGACCCGTCTCAAAATGCAGACGTCATCATGAGAATGATGGCAAGAAACTCAATGTCAGAAAAGCTTGCCGAAGACATTGATTCTGCTATCAAGAGGCTCTCAGATGAAGCATATGAAATTGCATTAAAGCATATAAGGAACAACCGTGAGGCCATCGACAAGATTGTCGAAGTCCTACTAGAGAAGGAGACAATTACCGGAGACGAATTCAGATCTCTCCTTTCGGAGTTTGTTGAAATTCCACCCGAAAACTTGGTCCCTACTTCAACTCCCTCACCAGTTGCTGTTTGA 2253 0.4354 MKKLQLFIILLCIALLLHVSLPSHSFLHLHSTHVSCIASLITLPFSLSLSLSLSLILFIKMAASLACLVGSGLTTQSNKMTLGKDLNGRRLLLSRRHSSSRRASKTILVKALLDQSEHKGRRGFLKLLNTTVGLSALLGSANANADEQGVSSSKMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAVSPELGNRVQRVRVQLPGLNQELLQKFRTKNIDFAAHNAQEESDSFFSNLIGNLAFPLIVIGGLFLLSRRSSGGTGGPGGSGLFGFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGIGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVSVDVPDIRGRTEILKVHGNNKKFDGDVSLEVVAMRTPGFSGADLANLLNEAAILAGRRGKAGISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEIIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSDIGPWSLMDPSQNADVIMRMMARNSMSEKLAEDIDSAIKRLSDEAYEIALKHIRNNREAIDKIVEVLLEKETITGDEFRSLLSEFVEIPPENLVPTSTPSPVAV* 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1417 750 ProSitePatterns AAA-protein family signature. 428 446 IPR003960 GO:0005524|GO:0016887
Mtr2g1417 750 Pfam ATPase family associated with various cellular activities (AAA) 325 456 IPR003959 GO:0005524|GO:0016887
Mtr2g1417 750 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 5 738 IPR005936 GO:0004176|GO:0004222|GO:0016020
Mtr2g1417 750 SUPERFAMILY FtsH protease domain-like 540 738 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Mtr2g1417 750 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 236 728 IPR005936 GO:0004176|GO:0004222|GO:0016020
Mtr2g1417 750 PANTHER METALLOPROTEASE M41 FTSH 56 740 - -
Mtr2g1417 750 Gene3D - 459 537 - -
Mtr2g1417 750 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 2, CHLOROPLASTIC 56 740 - -
Mtr2g1417 750 Gene3D Peptidase M41 538 733 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Mtr2g1417 750 SMART AAA_5 321 460 IPR003593 -
Mtr2g1417 750 Pfam AAA+ lid domain 480 522 IPR041569 -
Mtr2g1417 750 Pfam Peptidase family M41 539 727 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Mtr2g1417 750 Gene3D - 276 458 IPR027417 -
Mtr2g1417 750 Gene3D - 149 233 - -
Mtr2g1417 750 CDD AAA 300 457 - -
Mtr2g1417 750 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 283 528 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1417 Mtr-Chr2 15443946 15448666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1417 279 728 Miscellaneous Gene Families AT5G53170 50.220 1.31e-136 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1417 K03798 - gmx:100795567 1122.07