Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1397 ATGGCCACAAACACCATGGCTGGCTTGATCACTGGCTCTAATTCTCATTTCTCACATGACTCTGATGAGCATAAGCCTCCTCCTGCCAATAAATCTTCATCGAAGATATGTCGAGTTTGTGGCGATGAGATTGGATATAAGGAAAATGGAGAGCTTTTTGTGGCTTGTCATGTGTGTGCATTTCCTGTTTGTAAGCCTTGTTATGAGTATGAGAGGAGTGAAGGGAATCAATGTTGCCCTCAATGCAACAGTCGCTATAAGCGCCATAAAGGTTGTCCAAGAGTGGTTGGAGATGAAGATGAGAACCTTGATGGAGATGATTTTGAAGATGAGTTTCCGGTTAAGAATCATCATGATGATCTAGACCAGAACCGCGATGTTAATCATGTGGAAAGTGTGGACTACAATCAACAAAAATTGCATACTTTTTCTTCAGCAGGAAGCGTTACTGGCAAGGATTTGGAAGGGGAGAAAGAATTTTACAGCAATGAAGAATGGCAAGAAAGAGTTGAAAAATGGAAAGTAAGGCAAGAAAAGAGAGGTTTGCTAAACAAAGAGGATGGTAAAGAAGACCAAGGTGAAGAAGATGAGTATCTTATGGCTGAAGCAAGACAACCATTATGGCGCAAAGTTCCAATACCATCAAGCTTGATAAATCCATACCGAATAGTAATTATCATGAGACTTGTAATCCTAGCATTCTTCTTCCGTTTCCGTATCTTAACACCAGCATATGATGCATACCCTTTATGGCTCATATCAGTAATATGTGAAATATGGTTTGCATTATCATGGATACTTGATCAGTTTCCAAAATGGTTACCAATCACACGTGAAACATATTTAGACCGTTTATCTATAAGATTTGAACGTGAAGGCGAACCAAACCAGCTTTCACCTGTTGATGTTTTTGTTAGTTCTGTTGATCCTTTGAAAGAACCACCTATTATAACAGCAAACACTGTTCTTTCCATACTTTCTGTTGACTACCCTGTTGAGAAAGTCACATGCTATGTATCAGATGATGGTGCTTCTATGCTTTTGTTTGATTGTTTGGCTGAAACTTCTGAGTTTGCTAGAAGGTGGGTTCCTTTTTGTAAAAAGTATAGTATTGAACCAAGGGCACCTGAGTATTACTTTAATGAGAAGATTGATTACTTGAAAGATAAGGTTGAGCCTACTTTTGTCAAGGAAAGAAGGTCTATGAAGAGAGAATATGAAGAATTTAAAGTGAAAATTAACGCTTTGGTGGCAAAGGCTCTGAAGAAACCTGAGGAGGGCTGGGTTATGCAAGATGGAACTCCATGGCCTGGTAACAACACTCGTGATCATCCAGGGATGATTCAGGTATACTTAGGAAGTGCTGGTGCACTAGACGTGGAAGGCAAGGAACTGCCAAAACTCGTGTATATTTCCCGTGAAAAACGTCCCGGTTATCCACATCACAAGAAAGCCGGTGCCATGAACGCTTTGGTTCGAGTTTCTGCTGTGCTTACAAATGCACCATTCATGTTGAATCTCGATTGTGATCATTACATCAACAATAGCAAGGCTCTAAGAGAGGCCATGTGCTTCCTTATGGATCCTCAACTAGGGAAGAAACTCTGCTATGTCCAATTTCCTCAAAGATTTGATGGTATTGATCGTCACGATAGATATGCTAATCGCAACACTGTTTTCTTTGATATCAATATGAAAGGGCTTGATGGTATTCAAGGTCCAGTGTATGTCGGTACCGGAACTGTGTTCAACAGACAAGCATTGTATGGATATGATCCACCAGTTTCCGAGAAAAGGCCAAAGATGACATGTGATTGTTGGCCTAAATGGTGTTGCTTTTGTTGTGGTTCAAGGAAAACCAAATCAAAAAAGAAGTCAGGAACAAATGGAAGAAGTCTCTTTAGTAGATTGTACAAGAAGAAGAAAATGGGAGGAAAAGATTATGTTAGAAAAGGTTCTGGTTCCATGTTTGATCTCGAAGAGATTGAAGAAGGACTTGAAGGGTATGAGGAGCTAGAGAAATCATCACTTATGTCACAGAAAAGTTTCGAGAAGCGATTCGGTCAGTCACCAGTTTTCATTGCTTCAACTTTGATGGAAAATGGAGGACTTCCTGAAGGCACAAATACTCAATCATTGGTCAAGGAAGCTATTCATAACATAAGTTGTGGGTATGAAGAAAAGACAGATTGGGGAAAAGAGATTGGATGGATTTATGGCTCAGTCACAGAAGATATTTTGACTGGATTTAAGATGCACTGCAGAGGATGGAAATCAGTATATTGCATGCCAAAGAGGCCTGCTTTCAAGGGGTCTGCACCTATCAATCTGTCAGATAGGTTGCACCAAGTTCTGAGATGGGCTCTTGGTTCTGTTGAGATTTTCCTTAGTCGCCATTGTCCGTTGTGGTATGGTTATGGAGGAAAACTAAAGTATCTTGAGAGGTTGGCTTATACTAACACCATTGTTTATCCATTCACTTCAATCCCTTTGCTTGCATACTGCACAATTCCGGCTGTGTGTCTCCTCACTGGAAAGTTCATCATTCCCACTCTGACCAACCTTGCTAGTGTTTGGTTTATGGCACTATTTATCTCCATCATTTTGACCGGTGTACTCGAGCTTCGATGGAGTGGAGTTGCCATCGAAGACTGGTGGAGAAACGAGCAATTCTGGGTTATTGGAGGTGTATCAGCACATCTTTTTGCAGTGTTTCAAGGTCTCCTCAAAGTTCTTGCAGGAGTAGACACAAACTTTACTGTCACGGCAAAAGCTGCAGATGATGCTGAATTCGGAGAGTTATATCTCTTCAAATGGACAACACTTCTCATTCCACCAACCACTCTTATAATCTTGAACATTGTTGGTGTTGTTGCTGGTGTCTCAGATGCTATTAACAGTGGTAGTGGTTCATGGGGACCTTTATTTGGGAAGCTATTCTTTGCATTTTGGGTCATTGTTCATTTATATCCTTTCCTTAAAGGTCTCATGGGAAAACAAAACAGGACTCCTACCATTGTGGTGCTTTGGTCAATCCTTTTGGCATCAATTTTCTCATTGATTTGGGTTAGGATTGATCCTTTCTTGCCTAAGCAAACTGGTCCTATTCTCAAACAATGTGGTGTAGAATGCTGA 3135 0.4064 MATNTMAGLITGSNSHFSHDSDEHKPPPANKSSSKICRVCGDEIGYKENGELFVACHVCAFPVCKPCYEYERSEGNQCCPQCNSRYKRHKGCPRVVGDEDENLDGDDFEDEFPVKNHHDDLDQNRDVNHVESVDYNQQKLHTFSSAGSVTGKDLEGEKEFYSNEEWQERVEKWKVRQEKRGLLNKEDGKEDQGEEDEYLMAEARQPLWRKVPIPSSLINPYRIVIIMRLVILAFFFRFRILTPAYDAYPLWLISVICEIWFALSWILDQFPKWLPITRETYLDRLSIRFEREGEPNQLSPVDVFVSSVDPLKEPPIITANTVLSILSVDYPVEKVTCYVSDDGASMLLFDCLAETSEFARRWVPFCKKYSIEPRAPEYYFNEKIDYLKDKVEPTFVKERRSMKREYEEFKVKINALVAKALKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSAGALDVEGKELPKLVYISREKRPGYPHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKALREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGTVFNRQALYGYDPPVSEKRPKMTCDCWPKWCCFCCGSRKTKSKKKSGTNGRSLFSRLYKKKKMGGKDYVRKGSGSMFDLEEIEEGLEGYEELEKSSLMSQKSFEKRFGQSPVFIASTLMENGGLPEGTNTQSLVKEAIHNISCGYEEKTDWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKYLERLAYTNTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFISIILTGVLELRWSGVAIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTAKAADDAEFGELYLFKWTTLLIPPTTLIILNIVGVVAGVSDAINSGSGSWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPILKQCGVEC* 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1397 1044 SUPERFAMILY RING/U-box 22 104 - -
Mtr2g1397 1044 Coils Coil 399 419 - -
Mtr2g1397 1044 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 408 593 IPR029044 -
Mtr2g1397 1044 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Mtr2g1397 1044 Pfam Cellulose synthase 301 1037 IPR005150 GO:0016020|GO:0016760|GO:0030244
Mtr2g1397 1044 SUPERFAMILY Nucleotide-diphospho-sugar transferases 315 848 IPR029044 -
Mtr2g1397 1044 MobiDBLite consensus disorder prediction 1 16 - -
Mtr2g1397 1044 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 110 IPR013083 -
Mtr2g1397 1044 MobiDBLite consensus disorder prediction 1 33 - -
Mtr2g1397 1044 Pfam Zinc-binding RING-finger 28 102 IPR027934 -
Mtr2g1397 1044 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 160 1044 - -
Mtr2g1397 1044 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 23 125 - -
Mtr2g1397 1044 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 23 125 - -
Mtr2g1397 1044 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 160 1044 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1397 Mtr-Chr2 15229722 15235352 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1397 28 1044 Glycosyltransferase AT5G05170 64.958 0.0 1426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1397 K10999 - gmx:100781996 1933.69