Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1396 ATGACTAGAAAATGTTTCGTTTGTTTCATGTTTCTTGAGGTTGTTTGTTTCATTGTAATTGGTGTTCATGGTGACAAAAATTTACCTGCTAGGAAAATTTCTGATGGAAATTATCATGTAACAATGAGAAAATTGCAATCATTTAAAACCTCTTTAACAAGACATGATTCTTTTGCTTCAACACCATCATCTTCTTTTGCACCTTCTCCTTCTTCTCAGCCAGCTGAGGGTATGAACAATCCAAGAGTATACCATGTGACATCCTATGGTGCAGACCCAACAGGCAATTCAGATAGCACTGAAGCATTACTTGCAGCCATAGCAGATGCAACCAATGGTCCAAGTGAAGGATATTTGATGGAAGGCATCAGTAACCTTGGAGGTGCACAGATTAATCTTGAAGGTGGAAATTATATGATCAGAAGGTCACTCAAGTTACCGGTATCCGGCGTTGGAAACCTAATGATACATGGAGGAACCATAAAAGCCTCAAATGATTTTCCAAATGATGGCTACATTATTGATTTATCAACCTCTTCAAATGAAAATGATGGGAAAAATTCACCTTCATCATCCTACAATTTTGAGTACATAACTCTCAAGGATCTCTTATTGGATTCAAACTTTAGAGGAGGAGGCATTTCAGTCATAAATTCACTCAGAACAAACATAGACAATTGTTACATTACACATTTCACTACCAATGGAATTTTAGTCCAAAGTGGCCATGAAACATACATAAGAAACTCTTTCCTTGGCCAGCACATAACTGCCGGAGGCGATAAAAACGAAAGGAATTTCTCAGGCACAGGAATAAACATCCAAGGTAACGATAATGCTGTCACCGATGTTGTAATTTTCTCTGCTGCTATAGGAATCATGGTAACTGGTCAAGCAAACACATTTTCTGGTGTACATTGTTACAATAAGGCCACTGGATTCGGTGGTACCGGAATTTATTTGAAACTACCTGGTTTAACACAAACAAGGATTGTGAATTCATACATGGATTATACAAGTATTGTTGCTGAAGATCCTGTTCAACTTCATATTTCTAGTAGTTTCTTCCTTGGTGATGCCAATATTGTGTTGAAATCTATGAAAGGTGTTTTAAATGGTGTTACTATTGTTGATAACATGTTCTCTGGATCAAATCAAGGTGTTGAAGTTATTCATTTGGATAAATCAAATGGTCCTTTTCATCAAATTGATCAAGTTACTGTTGATAGGAACGTAGCGACGGGGATGAATTTAAAGGCTACTGTCGCGAAAAGATCGTTGCAAGGGAATGGTACTTCATGGAATGTTGATTTTAACAACATTCTTCTTTTTCCTAACCTTATAAAAAATGTTCAGTACTCGTTAAGTTCAACAGGTAGCAGTTTTCCTAATCATGCTATCAGAAATGTGTCGGACAATCGCGTTGTGATTGAAACGAATGAAGCAGTTGCTGCGAATGTTTTTGTCGCGGTGGATCAAAGTATGTCAAGTTGA 1494 0.3722 MTRKCFVCFMFLEVVCFIVIGVHGDKNLPARKISDGNYHVTMRKLQSFKTSLTRHDSFASTPSSSFAPSPSSQPAEGMNNPRVYHVTSYGADPTGNSDSTEALLAAIADATNGPSEGYLMEGISNLGGAQINLEGGNYMIRRSLKLPVSGVGNLMIHGGTIKASNDFPNDGYIIDLSTSSNENDGKNSPSSSYNFEYITLKDLLLDSNFRGGGISVINSLRTNIDNCYITHFTTNGILVQSGHETYIRNSFLGQHITAGGDKNERNFSGTGINIQGNDNAVTDVVIFSAAIGIMVTGQANTFSGVHCYNKATGFGGTGIYLKLPGLTQTRIVNSYMDYTSIVAEDPVQLHISSSFFLGDANIVLKSMKGVLNGVTIVDNMFSGSNQGVEVIHLDKSNGPFHQIDQVTVDRNVATGMNLKATVAKRSLQGNGTSWNVDFNNILLFPNLIKNVQYSLSSTGSSFPNHAIRNVSDNRVVIETNEAVAANVFVAVDQSMSS* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1396 497 PANTHER POLYGALACTURONASE QRT3-LIKE PROTEIN 4 497 - -
Mtr2g1396 497 Pfam Pectate lyase superfamily protein 86 313 IPR024535 -
Mtr2g1396 497 PANTHER POLYGALACTURONASE QRT3 4 497 IPR039279 GO:0004650
Mtr2g1396 497 Gene3D - 83 496 IPR012334 -
Mtr2g1396 497 SMART pbh1 219 241 IPR006626 -
Mtr2g1396 497 SMART pbh1 371 392 IPR006626 -
Mtr2g1396 497 SMART pbh1 151 176 IPR006626 -
Mtr2g1396 497 SMART pbh1 276 297 IPR006626 -
Mtr2g1396 497 MobiDBLite consensus disorder prediction 55 77 - -
Mtr2g1396 497 SUPERFAMILY Pectin lyase-like 82 471 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1396 Mtr-Chr2 15219395 15222088 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1396 - - gmx:100804107 772.311