Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1300 ATGTCACATTGTAGGATTTTCCACCACATTCTCAAACGCTGTAAAGCTTCTAAGAATTCCAAAACCGTTGCTAAAACTCACGCAAGGATCATTATACTTGGTTATGCCACATACCCATCTCTTGTAGCATCTCTAATATCAACCTATGCACATTGTCAGCAACCTAACATAGCCCATCATGTGTTTTCCAGGGTTATGAATTTGTTCAACATGAATTTGGTGATTGAAAGCCTAGTGAAATCTGGGGAATGTGATATTGCCAAGAAGGTGTTTGATAAAATGCCTGTTCGAGATGTTGTTACTTGGAACACTGTCATTGGAGGGTATGTTAAAAATTTGCGCTTTCTTGATGCATTGAGTATTTTCCGCGTCATGTTGAAGGCCAAGGTTGAGCCGGATGGGTTTACTTTTGCTTCTGTGGTGACGGGGTGTGCACGTCTCGGTTCATTTTGTAATGCGAAGTGGGTGCATGGTTTAATGGTTGAGAAAAAGGTTGAACTTAATTATATACTCACTGCTGCGTTGGTTGACATGTATGCTAAGTGTGGTAGGGTTGATGTTTCGAAAGAGGTTTTTGAGTGTGTGGTGCGTGATCATGTTTCTGTTTGGAATGCTATGATTAATGGGTTGGCCATTCATGGACATGCTTTGGATGCAACTGTGGTTTTTTCAAGGATGGAGGTGGAAAATGTTTTGCCGGATTCTGTTACTTTTGTTGGGATTTTGAAAGGTTGCAGCCACTGTGGGTTAGTTGAGGTAGGTCGCAAGTACTTTGAAATGATGCAGAATCGATTTTTTATTCAGCCGCAGCTTAAGCATTATGGTACCATGGTTGATCTCTTGGGACGAGCAGGGCATTTGGAAGAGGCCTATTCCATGATTAAGGCGATGTCGGTGGAGCCTGATGTTGTTATTTGGAGATCACTTTTGAGTGCTTGTAGAATCCACGGAAAGAAAGAACTTGGTGAATTTGCTATTGCAAATATTTCCCGTCTTGAGAGTGGGGATTTTGTCTTGTTGTCAAACATGTATTGCTCTTTCAAGAATTGGCATGGTGCTGAGAGGGTGAGACACATGATGAAAAAGGGAGGAGTTCGTAAAAAGCGTGGTAAGAGTTGGATTGAATTGGGGGGCAGCATTCATCAATTTAATGCAGCTGATCAGTCACATGCTGAAATGAAAGCAATTTACAGGGTGCTGGAAGGTTTGATGCAGAGAGCTAAACTGGAAGGATTCACACCTTTGACAGAACTTGTTTTGATGGATGTTTCTGAAGAGGAAAAAGAGGCGAATTTAACATTTCATAGCGAGAAGCTGGCTTTGGCTTACGGAGTTCTGAAAAGTAGCCCTGGAACAAAAATCACGATTTCCAAGAACTTGCGTATTTGTCAAGACTGTCATAATTGGATTAAAATTGTCTCAAGGATATTAAACAGAGAGATAATTGTGAGAGATCGCATCCGTTTTCATCAATTTGAAGGTGGATGTTGCTCTTGTGGAGACTACTGGTAG 1512 0.4134 MSHCRIFHHILKRCKASKNSKTVAKTHARIIILGYATYPSLVASLISTYAHCQQPNIAHHVFSRVMNLFNMNLVIESLVKSGECDIAKKVFDKMPVRDVVTWNTVIGGYVKNLRFLDALSIFRVMLKAKVEPDGFTFASVVTGCARLGSFCNAKWVHGLMVEKKVELNYILTAALVDMYAKCGRVDVSKEVFECVVRDHVSVWNAMINGLAIHGHALDATVVFSRMEVENVLPDSVTFVGILKGCSHCGLVEVGRKYFEMMQNRFFIQPQLKHYGTMVDLLGRAGHLEEAYSMIKAMSVEPDVVIWRSLLSACRIHGKKELGEFAIANISRLESGDFVLLSNMYCSFKNWHGAERVRHMMKKGGVRKKRGKSWIELGGSIHQFNAADQSHAEMKAIYRVLEGLMQRAKLEGFTPLTELVLMDVSEEEKEANLTFHSEKLALAYGVLKSSPGTKITISKNLRICQDCHNWIKIVSRILNREIIVRDRIRFHQFEGGCCSCGDYW* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1300 503 Gene3D Tetratricopeptide repeat domain 194 404 IPR011990 GO:0005515
Mtr2g1300 503 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 98 132 IPR002885 -
Mtr2g1300 503 Pfam DYW family of nucleic acid deaminases 411 503 IPR032867 GO:0008270
Mtr2g1300 503 Gene3D Tetratricopeptide repeat domain 7 153 IPR011990 GO:0005515
Mtr2g1300 503 PANTHER OS07G0578800 PROTEIN-RELATED 4 449 IPR045215 GO:0003723|GO:0009451
Mtr2g1300 503 Pfam E motif 316 375 IPR046848 -
Mtr2g1300 503 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Mtr2g1300 503 TIGRFAM PPR: pentatricopeptide repeat domain 100 133 IPR002885 -
Mtr2g1300 503 TIGRFAM PPR: pentatricopeptide repeat domain 202 234 IPR002885 -
Mtr2g1300 503 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 449 - -
Mtr2g1300 503 Pfam PPR repeat family 97 146 IPR002885 -
Mtr2g1300 503 Pfam PPR repeat family 200 246 IPR002885 -
Mtr2g1300 503 Pfam PPR repeat 274 297 IPR002885 -
Mtr2g1300 503 Pfam PPR repeat 174 198 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1300 Mtr-Chr2 14176048 14178707 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1300 72 503 Glycoside Hydrolase AT3G49170 38.497 4.44e-101 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1300 - - gmx:100788229 821.231