Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1279 ATGGCACCTCAAGCAGATTTTGCTATTGCTAAGATTGGATATGAAATTGAAAAATTCTTTGGAAGACAGAAAAGTTTTAGCAATAATAGCAACCCTCCAGCTACTCAAAATCTTTGTCAATACAAATTTTATCCAACCTATGGTGCTACTACTGTTACCAAAGTGGTGCACACAAATGTTGAAGATCTTACTTGCAATGAAGCTGCTTCAAGATTCATAGCAGAAAAGAGAAAAGATCAGGTTCAAGTTAAAGTTATTAATTATGTTGATGCTGGTCCAAGAAAAAGGCCAGTTTTTGGTCCTGATATCTACAGAGGTATAAATGTAGCCAAAGATACTCTTGCTCCTGGTGAGAAAATTATTAATGTCATGAGTTTTGGAGCAAAACCTGATGGAAAATCTGACTGCACTCAGGCTTTCATGGATGGATGGCAAGCAGCCTGCAAGTCCAAAGTGCAAGCCAGGCTTCTAATCCCTTCAGGAAGATTCCTTGTTTCTTCAATGTTCTTTTCAGGCCCATGTTTGACTCCAGGGCCCATAACAATCCAAGTTGTAGGCACAGTTGTGGCCACAACAGATATCAGTGACTATGTGGATGGTGAATGGCTCATGTTTCAGAAAATATCTGGATTAAAACTTATTGGTGGAGGTACTTTTGATGGGCAGGGTCAATCTTCATGGAAATATGCTGAAAACTGTGAAACTAATCCAACCAATCAATGTGTTAGAGCCCCTAGTAGTATTTATTTTAACCAAGTTACTGATGGAATTATACAAAACATCAAATCTAAAGACCCAAAAGGCTTTCATGTATTTGTCACTAACTCTGCAAACATTAGACTTCGACTAATTAAGCTCAATGCACCAGCTACTAGTCCAAATACTGATGGCCTTCATATAAGTCACTCAATCAATGTTAAAATATCAAGAAGTAGTGTTGAAACTGGTGATGATTGTGTCTCCATGATACAAGGAGTTAGTAATGTTACCATCAAGAGAATCAGGTGTGGTCCAGGACATGGTATCAGTATTGGAAGTCTTGGAAAGTATCCGGATGAGATAGAGGTGAGTGGCATTAGAGTGCAGACCTGCAAATTAGTTGGCACAACCAATGGCCTCAGAATCAAATCATGGCCAGATAAGTATCCTGGTGCAGCAACAGATATCAACTACAGTGACATTACAATGGAAAATGTTAAGAATCCTATCATCATTGACCAAGAGTATGAATGCTCTCCAAATTGCAAAAAGAAGCCTTCACTTGTGAAGATAAAAAATATAAGTTTCAGAAATATAAGAGGAACCACAACTTCTCCAATTGCAGTGGACTTAAAGTGTAGCAAACTATTCCCTTGCAAAAATGTTGGACTTCACAACATAAACCTCAGTCTTGGAGCCAAGAAGCCTACTGCCTCTAAATGTGCCAACATCAAACCTATCTATAGTGGCTCGCAAAAACCACCACCTTGTCGATAG 1476 0.3875 MAPQADFAIAKIGYEIEKFFGRQKSFSNNSNPPATQNLCQYKFYPTYGATTVTKVVHTNVEDLTCNEAASRFIAEKRKDQVQVKVINYVDAGPRKRPVFGPDIYRGINVAKDTLAPGEKIINVMSFGAKPDGKSDCTQAFMDGWQAACKSKVQARLLIPSGRFLVSSMFFSGPCLTPGPITIQVVGTVVATTDISDYVDGEWLMFQKISGLKLIGGGTFDGQGQSSWKYAENCETNPTNQCVRAPSSIYFNQVTDGIIQNIKSKDPKGFHVFVTNSANIRLRLIKLNAPATSPNTDGLHISHSINVKISRSSVETGDDCVSMIQGVSNVTIKRIRCGPGHGISIGSLGKYPDEIEVSGIRVQTCKLVGTTNGLRIKSWPDKYPGAATDINYSDITMENVKNPIIIDQEYECSPNCKKKPSLVKIKNISFRNIRGTTTSPIAVDLKCSKLFPCKNVGLHNINLSLGAKKPTASKCANIKPIYSGSQKPPPCR* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1279 491 ProSitePatterns Polygalacturonase active site. 333 346 IPR000743 GO:0004650|GO:0005975
Mtr2g1279 491 Gene3D - 109 487 IPR012334 -
Mtr2g1279 491 Pfam Glycosyl hydrolases family 28 148 478 IPR000743 GO:0004650|GO:0005975
Mtr2g1279 491 PANTHER - 85 491 - -
Mtr2g1279 491 PANTHER POLYGALACTURONASE 85 491 - -
Mtr2g1279 491 SUPERFAMILY Pectin lyase-like 117 490 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1279 Mtr-Chr2 13890263 13896953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1279 120 491 Glycoside Hydrolase AT4G18180 44.730 1.74e-107 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1279 K01213 - gmx:106796220 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g1279 2 13890263 13896953 Mtr2g1279 2 13890263 13896953 ECH