Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1268 ATGTCAGCTCTGTACAAAGAATTGCTTCTACTCGTTCATCAATATCTTGACGAAGAGGGTTTAAAGCAAACCATGCGCATGCTCGAGAAGGAATCAGGTGTATTCTTTGATTTGAAGTACTTTGAAGAGAAAATTCTTGCTGGTGAATTTGATGAAAGTGAGAAGTACCTCAGTGCCTTTATCAATATCACTGACAGTCCAAGCTCCATGAAAATGTTCTTTGAGATTAGGAAGCAAAAGTATCTTGAAGCCTTGGACAGGGGTGACAAAACGACGGCGGTTGAAATTCTGGTTAAAGACTTAAAAATATTTTCAACATATAATAATGATCTCTACAATAAAATAATAAATCTTATAACTCTTGACAACTTCAGGGAGAATGTAGAATTATCGCATTATCGAGATGTTAAATCAATTAGAAAGACATTGATGGAAGAGCTCAAGAATATGATTGACATGAACCTCGTATTGAAGAAAAAGATTATGCTGCCTTCGTTGTCGTCGTCGCGGTTGCGATATCTGGTTAATCAAGGTTTGAATTGGCAGCATCACCTATGCAAGTATCCAAAGGAAAATCCAGAAGTCACAACATTGTTGATCGACCATACTTGTCCTTCGCCTCAACAGATGTTGCTGCTACAGATGCCTACAATGCTTCCTGCTACAGATTCTGTTCCACTTCCCCCAGCCCCTGCATGGATGGTGAATGGAAATCCTTCCTCGTCTTCACAATCACATGCTACACTAGCAGCTTCCTCATTGCCCGGTCCTTCGAATCAAGGCTCTATTTCGAAGCTTTCATTAACAATGAATGCTCCACTTCCACCTATGGATCGCCAAAGTAATGACCGCGTTCAACAATTAAGACGGTTTCTGGCTGCAGAATCGGTTGAAGAGCATTACTCTAATGGCACCTCTTTACAGGCTGGGCAAGTTGCATCTACCGTTACACCACAACCAACAACTCGGTTGTTTGATGAAATTCCCCAAACTGTTGTTTGGGAGTTAAATCAGGGATCAACTGTGAAGACCATGGAATTTCATCCTACAATTCATTCTATACTAGCTGTTGGTTGTGAAAATGGTGAAATTTCACTATGGGATGCAAGGATTAAAGAGAAGTTGATAGCGAAATCTTTCAATATATGGAATCTTTCTAAATGTTCCGTCGAATTTCAGGCTGCAAATCCGCAAGAATTGTCGGTCATTCGTGTAGCATGGAGCCCGGATGCTAGTTACATTGGTGTTGCTTTTGCAAAGCATTTGATTCATTTGTATTCCTATCAATTCCCTAAAGGTGTACATCAGCATTTGGAGATTGATGCTCATGATGGTGGTGTTAATGACTTGGCATTTTCAGTTCCAAAAAATCAGCTATGTGTTGTAACTTGTGGAGATGATAAGTTAATTAAGGTATGGGATTTGAATGGAGATAAGATCTTTAGCTTTGAAGGCCATGTAGCTCCTGTTTGTTCAGTTCTTCCTCACTCAAAGCGAAATATCAAGTTTTTAATTTCTACTTCGATTGACGGAAAATTTAGAGTCTGGTTGTATGAGAACGAGAGCCTCCAGGTGGAATGCGACACTCCTGGAAAGTGTAGCACTTCACTGCTCTATAGTGCTGATGGAACTAGATTGTTTTCGTGTGGGACAACCACGGAGGGAGATTGTTTCCTAGCTGAGTGGGATGACAATGTCGGTGTAGTAAAAAGAATTTATTCTGGGTTTAGATCCAATTCTGCTGGCATGGTGCAATTTGACACTGCAAAGAGTCGATATTTGGCTGTCGGTGTAGATAACCAAATTAAGTTTTGGGATGTGGACATTATTAATGTTCTAACTAGTACAGATGTTGATGGTGGTCTTCCTAGTCTACCTCGCTTGACGTTCAACAAGGAAGGAAATTTGCTTGCTGTTTCTACAGTAGATGGTGGTTTTAAAGTCCTTGCTAACGTCAATGGTATCAAATTCTTGGGCGGCATTGAATCAAATAAAGAACCTATTGATGTAAAGATGGAAGACATGTTTGCTATAGCTAGTAGCGACGAGAATAATAGAAATTCAGATGATACAAATTCAAATGATGTAAAGGAAATCACTCTTCCTGTTCAGTGTCAGGTAGTTACTATGCCGGAGACTGTGGGTCCGAGTAACAAGGCTATTCGTCTTGTTTACACCAATGATGGAGATGGTCTTCTTGCTCTTGGTTCAAAAGGGATTCAAAAGTTGTGGAAATGGAAACCTACTCGATTGAATCGTAGTGGAAAGGCGACTGCAAGTGTTGCTCCTGAACATTGGACACCGAAGACTGATGTTTTTTTGAAGAACGATGTCCCAGACAATTCTGATTCAGCGATTCCTTGCTTAGACATCTCCAATAATGATTTCTATGCTATGTCTTCATGTGGAGGAATAGTTTCATTATTCAACATGGTGAAATTTAAAATAATGGCTGAATTTTTGCCACCTCCACCAGCTCCAACATTCCTTGCGTTTAACCCTGTAGACAATAACATTGTTGTGATCGGAAGGGAAGATGCGGAGATTGATATTTTTATGCACAGTAAGCTTGTGGAGAAACTAAGGGGTCACCAAAAACACATCACTGGTATAGTGTTTTCTCCTCGACTGAATACAATGGTAACTTCAGATGCTGATGCTCAGCTTTTCTCTTGGTGCACGACGACATGGGTTAAGAAGAAACAGGTGTCAATCCGAATGCCAGGTGGTGGAAATGCACCTGCAGGTGACACTAAAGTTCAATTTCGCATCGATCAAGTGAAGTTGCTGGTATGCCATGAAACACAGATAGCGATATACGATGCTTCAAACATGGAATTGATTCGCTGGTGGCTGCCACAAGGAGGATTGTCTGGTGCCATATCCTCTGCAACTTATTGTTGCCATGGTGAAGTAATTTATGCTGCTTTTACTGATGGAAACATTGGAATATTTAGTGCTGACAACCTCATACTACGATGTCGCATTTCTTCGTCTTCATACCTATTTCAAACTCCATCAAACAGTCAAAATGTGTACCCTCTTTTTATCACAAGACATCCACAAGATCGCTATCAATTTGCAATTGGACTATCAGATGGATCTGTTACAATTATGGAGCCCAAAAAGTATGAAGCATGGTGGTGGTAA 3150 0.4041 MSALYKELLLLVHQYLDEEGLKQTMRMLEKESGVFFDLKYFEEKILAGEFDESEKYLSAFINITDSPSSMKMFFEIRKQKYLEALDRGDKTTAVEILVKDLKIFSTYNNDLYNKIINLITLDNFRENVELSHYRDVKSIRKTLMEELKNMIDMNLVLKKKIMLPSLSSSRLRYLVNQGLNWQHHLCKYPKENPEVTTLLIDHTCPSPQQMLLLQMPTMLPATDSVPLPPAPAWMVNGNPSSSSQSHATLAASSLPGPSNQGSISKLSLTMNAPLPPMDRQSNDRVQQLRRFLAAESVEEHYSNGTSLQAGQVASTVTPQPTTRLFDEIPQTVVWELNQGSTVKTMEFHPTIHSILAVGCENGEISLWDARIKEKLIAKSFNIWNLSKCSVEFQAANPQELSVIRVAWSPDASYIGVAFAKHLIHLYSYQFPKGVHQHLEIDAHDGGVNDLAFSVPKNQLCVVTCGDDKLIKVWDLNGDKIFSFEGHVAPVCSVLPHSKRNIKFLISTSIDGKFRVWLYENESLQVECDTPGKCSTSLLYSADGTRLFSCGTTTEGDCFLAEWDDNVGVVKRIYSGFRSNSAGMVQFDTAKSRYLAVGVDNQIKFWDVDIINVLTSTDVDGGLPSLPRLTFNKEGNLLAVSTVDGGFKVLANVNGIKFLGGIESNKEPIDVKMEDMFAIASSDENNRNSDDTNSNDVKEITLPVQCQVVTMPETVGPSNKAIRLVYTNDGDGLLALGSKGIQKLWKWKPTRLNRSGKATASVAPEHWTPKTDVFLKNDVPDNSDSAIPCLDISNNDFYAMSSCGGIVSLFNMVKFKIMAEFLPPPPAPTFLAFNPVDNNIVVIGREDAEIDIFMHSKLVEKLRGHQKHITGIVFSPRLNTMVTSDADAQLFSWCTTTWVKKKQVSIRMPGGGNAPAGDTKVQFRIDQVKLLVCHETQIAIYDASNMELIRWWLPQGGLSGAISSATYCCHGEVIYAAFTDGNIGIFSADNLILRCRISSSSYLFQTPSNSQNVYPLFITRHPQDRYQFAIGLSDGSVTIMEPKKYEAWWW* 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1268 1049 ProSiteProfiles Trp-Asp (WD) repeats profile. 440 483 IPR001680 GO:0005515
Mtr2g1268 1049 Gene3D - 714 1048 IPR015943 GO:0005515
Mtr2g1268 1049 ProSitePatterns Trp-Asp (WD) repeats signature. 461 475 IPR019775 -
Mtr2g1268 1049 SMART Lish 4 36 IPR006594 GO:0005515
Mtr2g1268 1049 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 669 IPR027728 GO:0006355
Mtr2g1268 1049 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 683 1048 IPR027728 GO:0006355
Mtr2g1268 1049 SUPERFAMILY WD40 repeat-like 308 648 IPR036322 GO:0005515
Mtr2g1268 1049 MobiDBLite consensus disorder prediction 236 263 - -
Mtr2g1268 1049 ProSiteProfiles LIS1 homology (LisH) motif profile. 6 36 IPR006594 GO:0005515
Mtr2g1268 1049 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Mtr2g1268 1049 Pfam LisH-like dimerisation domain 11 34 - -
Mtr2g1268 1049 SMART ctlh 34 92 IPR006595 -
Mtr2g1268 1049 Gene3D - 309 608 IPR015943 GO:0005515
Mtr2g1268 1049 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 1 669 - -
Mtr2g1268 1049 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 683 1048 - -
Mtr2g1268 1049 SUPERFAMILY WD40 repeat-like 723 1043 IPR036322 GO:0005515
Mtr2g1268 1049 SMART WD40_4 476 517 IPR001680 GO:0005515
Mtr2g1268 1049 SMART WD40_4 329 368 IPR001680 GO:0005515
Mtr2g1268 1049 SMART WD40_4 944 986 IPR001680 GO:0005515
Mtr2g1268 1049 SMART WD40_4 433 474 IPR001680 GO:0005515
Mtr2g1268 1049 SMART WD40_4 854 893 IPR001680 GO:0005515
Mtr2g1268 1049 SMART WD40_4 566 606 IPR001680 GO:0005515
Mtr2g1268 1049 SMART WD40_4 385 427 IPR001680 GO:0005515
Mtr2g1268 1049 ProSiteProfiles Trp-Asp (WD) repeats profile. 861 892 IPR001680 GO:0005515
Mtr2g1268 1049 Pfam WD domain, G-beta repeat 440 474 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1268 Mtr-Chr2 13700336 13707917 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1268 421 634 Miscellaneous Gene Families AT5G08390 23.041 7.62e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1268 - - mtr:MTR_2g435440 1109.36