Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4329 ATGTACAAGAGAGCAAGGAACAGCGTTCACAAACCCCTTCGCGATCTCTCCAATCGAGAGCTCGGTCACTTACCTGCCAGAATATTCCCTAACCGCCTCGCCGCCTCCGAGGATCTTGTTCTTCGACTTGATGTATTTAAAAAGCTCGACAAGCACAGAGGCTGTGTCAACACTGTATGCTTCAATGCAGATGGTGACATTCTGCTTTCAGGTTCTGATGACAGGAGGATTATTCTCTGGGATTGGGAAACCGGCCGTGTTAAGCTCTCCTTCCATTCCGGTCATAGTAACAATGTTTTCCAGGCGAAGTTCATGTCTCACTCCTATGATCGTAGCATTGTCACTTGTGCTGCTGATGGCCAGGCGAGACATGCTCAACTTCTTGAAGACGGACATGTGGAAACCAAGTTATTGGGGAAGCATCAAGGACGGGCTCATAAGTTGGCTATCGAACCTGGTAGTCCTCATATATTTTACACTTGCGGTGAAGATGGATTAGTACAGCATTTTGATCTTAGAACTGGGACTGCAACAGAACTTTTCACCTGCAAGCCACTAAAGGATAGTTGGAATTACATGCCAGTTATCCATCTTAATGCAATTGCAATTGATCCAAGGAACCCAAATCTCTTTGCGGTTGCTGGGTCTGATGAGTATACCCGACTTTTTGATATCCGCAAGTATAAATGGGATGCATCCACCGATTTTGGTCAACCAACTGACTACTTTTGCCCTCCGCACTTGATTGGTGATGAGAGAGTAGGAATAACAGGCCTGGCCTTTTCTGAACAAAGGGAGCTTCTTGTGTCATACAATGATGAATTTATTTATCTGTTTACACAAGATATGGGTTTGGGACTGGACCCTGTTCCCGGATCCCCTATATCTGTGGATAGTGATACAAGTGAAGCAGGAGGCAGTCATGGATCTGCACGATCTCCATCAAACACAGATGCTGATGTTAAAATCGCGCCTCAAGTTTTCAAAGGACACAGGAATTGCGAGACAGTGAAGGGTGTTAATTTCTTTGGGCCTAATTGTGAGTATGTGGTGAGTGGGTCAGACTGTGGTCGTATTTTCACATGGAAGAAGAAAGGTGGTGAGCTTATTCGTGTCATGGAAGCAGACAAGCATGTTGTGAACTGTATCGAGTCTCATCCTCATTCAACAGTTCTTGCAAGCAGCGGTATTGAGCATGACATCAAGATATGGACTCCAAAGGCCCTCGAGAAAGCTACTTTGCCCAAAAATATTGAGCAGAAACCCAAGGCTAGGGGCTGGATGTACCAGATAGCTTCTCAGGAAGACCTGATGTTGCAACTGTTTTCACTTCCAAGACGGAGGGCTAGGACAGAAAACACTGTAGAACACTCAACTGCAGATCAAGAACTTTTAGACTTGATACTGACATTCAATACTATTAGTGACGATTCTACTGACGATGATGGTGATGATGATGGAGATGCAACCAACCAAGATGACTTGTTCAGTTGA 1494 0.4498 MYKRARNSVHKPLRDLSNRELGHLPARIFPNRLAASEDLVLRLDVFKKLDKHRGCVNTVCFNADGDILLSGSDDRRIILWDWETGRVKLSFHSGHSNNVFQAKFMSHSYDRSIVTCAADGQARHAQLLEDGHVETKLLGKHQGRAHKLAIEPGSPHIFYTCGEDGLVQHFDLRTGTATELFTCKPLKDSWNYMPVIHLNAIAIDPRNPNLFAVAGSDEYTRLFDIRKYKWDASTDFGQPTDYFCPPHLIGDERVGITGLAFSEQRELLVSYNDEFIYLFTQDMGLGLDPVPGSPISVDSDTSEAGGSHGSARSPSNTDADVKIAPQVFKGHRNCETVKGVNFFGPNCEYVVSGSDCGRIFTWKKKGGELIRVMEADKHVVNCIESHPHSTVLASSGIEHDIKIWTPKALEKATLPKNIEQKPKARGWMYQIASQEDLMLQLFSLPRRRARTENTVEHSTADQELLDLILTFNTISDDSTDDDGDDDGDATNQDDLFS* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4329 497 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 49 86 - -
Mtr1g4329 497 MobiDBLite consensus disorder prediction 477 491 - -
Mtr1g4329 497 SMART WD40_4 42 81 IPR001680 GO:0005515
Mtr1g4329 497 SMART WD40_4 176 224 IPR001680 GO:0005515
Mtr1g4329 497 SMART WD40_4 321 363 IPR001680 GO:0005515
Mtr1g4329 497 SMART WD40_4 131 171 IPR001680 GO:0005515
Mtr1g4329 497 SMART WD40_4 241 280 IPR001680 GO:0005515
Mtr1g4329 497 SMART WD40_4 366 405 IPR001680 GO:0005515
Mtr1g4329 497 SMART WD40_4 84 126 IPR001680 GO:0005515
Mtr1g4329 497 MobiDBLite consensus disorder prediction 476 497 - -
Mtr1g4329 497 Pfam WD domain, G-beta repeat 48 81 IPR001680 GO:0005515
Mtr1g4329 497 Pfam WD domain, G-beta repeat 370 404 IPR001680 GO:0005515
Mtr1g4329 497 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 7 480 IPR045151 -
Mtr1g4329 497 ProSiteProfiles Trp-Asp (WD) repeats profile. 49 90 IPR001680 GO:0005515
Mtr1g4329 497 PANTHER WD40/YVTN REPEAT-LIKE-CONTAINING DOMAIN-CONTAINING PROTEIN-RELATED 7 480 - -
Mtr1g4329 497 Gene3D - 37 407 IPR015943 GO:0005515
Mtr1g4329 497 MobiDBLite consensus disorder prediction 290 318 - -
Mtr1g4329 497 MobiDBLite consensus disorder prediction 295 318 - -
Mtr1g4329 497 SUPERFAMILY WD40 repeat-like 41 404 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4329 Mtr-Chr1 54973721 54978589 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4329 K11804 - gmx:100791300 781.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4329 1 54973721 54978589 Mtr1g4329 1 54973721 54978589 ECH