Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4327 ATGGAAGGGTTAACAGGGCTTAGTCACCTATTTGTGACAATGTTTCTAGCAGGGTTTGGAGGAATTATAGTTATGCCTTCAATAACAGATGTCACCATGGCTGCACTTTGTCCTGGTCAAGATGAATGCTCTCTTGCCATTTACCTCTCTGGTTTCCAACAAGTTATGATAGGAATTGGGTCAGTAATGACAACGCCACTAATTGGGAATTTGTCTGACCGGTACGGCAGGAAAGCCTTGATCACACTTCCTCTCACTGTCTCTCTCATTCCTCAAGCTATATTGGCATATAGCAGGGATACAAAATTCTTCTATGCATACTATGTGGTCAAAACTCTTGCTGCCTTAGCAGGCGAAGGCAGCTTCCATTGCCTAGCTCTTGCATATGTGGCCGATATAGTTCCAGTTGGAAAACGAGCATCAGCATTTGGAATACTAGCTGGTGTTGGATCTGCATCGTTTGTTGGCGGAACATTAGCTGCTAGATTCCTATCCGCGGCATTAACATTTCAGGTTGCTTCAGTCTCCTCAATGATAGGATTGGTCTACATGAGAATTTTCCTTAAGGAAAGTGCACCTATGAGGCAGCCATTATTGAAAGAGGCAGAGGAACCATGCATTGAACAGTGTGAGGATGATTTGCCACAAAGAACATTTAAGAAACTACCTTCAATGGGGGACTTAATTTGTTTGCTTAAGTGTAGCCCTACATTCTCACAAGCAGCAATTGTTTTACTCTTCAATAGTCTTGCAGACGGCGGCTCGATGGCTGTAACAATGTATTATTTGAAGGCACGTTTTCAATACAACAAAAATCAGTTTGCCGATTTGATGATGATTTCCGGGATTGGAGCTACTCTGACACAACTATTTCTCATGCCCATATTAGTACCCGCTGTTGGCGAGGAGAAGTTGCTCACAACAGGGCTCTTTGTTTCCTGCATAAGTATGTTGATGTACAGTATATCGTGGTCAGCATGGGTTCCTTATGCTCTAGCAGGTTTCTCTGTTTTAGGAGTTCTAGTGCGCCCATCTCTAACCAGCATTGCATCCAAACAAGTTGGACCTAATGAACAGGGAATGGTTCAAGGATGTCTCTCAGGAATCACTTCCGCCGCCAACATCATATCTCCGTTAATTTTCAGTCCACTGACAGCCTTATTCCTGTCAGAAGATGCACCATTTAATTTTCCTGGATTCAGCCTAATGTGCCTTGGGCTAACACTGATGACAGCATTTTTCCTTAGCCTAATGATTCGTGCTCCCCCTCCTATTATGGGTGACAAAGTTAGTAGTAACCGCTGCACAGAAACCTTGGTCTGA 1323 0.4361 MEGLTGLSHLFVTMFLAGFGGIIVMPSITDVTMAALCPGQDECSLAIYLSGFQQVMIGIGSVMTTPLIGNLSDRYGRKALITLPLTVSLIPQAILAYSRDTKFFYAYYVVKTLAALAGEGSFHCLALAYVADIVPVGKRASAFGILAGVGSASFVGGTLAARFLSAALTFQVASVSSMIGLVYMRIFLKESAPMRQPLLKEAEEPCIEQCEDDLPQRTFKKLPSMGDLICLLKCSPTFSQAAIVLLFNSLADGGSMAVTMYYLKARFQYNKNQFADLMMISGIGATLTQLFLMPILVPAVGEEKLLTTGLFVSCISMLMYSISWSAWVPYALAGFSVLGVLVRPSLTSIASKQVGPNEQGMVQGCLSGITSAANIISPLIFSPLTALFLSEDAPFNFPGFSLMCLGLTLMTAFFLSLMIRAPPPIMGDKVSSNRCTETLV* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4327 440 PRINTS Tetracycline resistance protein signature 50 69 IPR001958 GO:0022857
Mtr1g4327 440 PRINTS Tetracycline resistance protein signature 302 323 IPR001958 GO:0022857
Mtr1g4327 440 PRINTS Tetracycline resistance protein signature 327 347 IPR001958 GO:0022857
Mtr1g4327 440 PRINTS Tetracycline resistance protein signature 362 385 IPR001958 GO:0022857
Mtr1g4327 440 CDD MFS_SLC46_TetA_like 10 418 - -
Mtr1g4327 440 ProSiteProfiles Major facilitator superfamily (MFS) profile. 6 424 IPR020846 GO:0022857
Mtr1g4327 440 Gene3D MFS general substrate transporter like domains 7 419 IPR036259 -
Mtr1g4327 440 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 6 429 - -
Mtr1g4327 440 Pfam Major Facilitator Superfamily 10 378 IPR011701 GO:0022857|GO:0055085
Mtr1g4327 440 SUPERFAMILY MFS general substrate transporter 10 421 IPR036259 -
Mtr1g4327 440 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 6 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4327 Mtr-Chr1 54961440 54967667 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4327 2 437 Organic Solute Cotransporters AT2G16990 44.371 1.22e-121 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4327 - - gmx:100805770 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4327 1 54961440 54967667 Mtr1g4327 1 54961440 54967667 ECH