Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4306 ATGGAAGTTCAACAACATGAAGCGCATTCTGAAAACAAAGAGCCGGCTGAAAATGCTAATGCCGAACCTGATGGAGTTTCTTGTAAGAAAAGTAATACTATGCAAATTTATAGACAAGATGTTGTCAAGAATAAAAACACTGGGATGGTTGGGATTGTGACAGAAGTTAATGGTGATTCTGATTCGGATTCAGATTCTGATTCTGATACAGACAGTGGAGTCACTGATGATGAGGGTGAGGAGGGTGATGTTGAGGAAGGTGATGAAAGTAATAATGGTTGCAGAAATTCTGATAGGAATGATGCTTCTGTGCACCGTAAGACTGCTGCTCTTCAGACTAACGAGCTACGTGTACTCTGGATGGATGAATCTGAATCCACGCAGAATTTCAGTGATGTAGAAGTTGTTGATCGTGGATTTTTACATAGTGATTTTGTAGCTTCTGCCTCTGACCCTACCGGGCAAGTGGGTGTTGTGGTTGATGTCAATATATCTGTGGATTTGTTGGCCCATGATGGATCTATCATAAAAGATGTATCATCTAAAGACTTGAAGCGTATCAGGGATTTCACTGCTGGAGATTACGTGGTGCTCGGGTCTTGGTTAGGAAAAGTTGATGATGTTTTGGATAATGTGACTGTCTTATTTGATGATGGTTCAGTTTGTAAAGTCTCCAAAGCAGATCCGATGGATCTTAAACCAATTTCGAAGAACAATATTCTTGAAGATGGACATTTCCCTTATTACCCAGGGCAACGTGTAAGGGCCAAGTCTTCATCCATCTTCAAGATGGCTAGATGGTTGTCTGGCTTGTGGAAAGCTAGTAGGTTAGAAGGTACTGTCACCAATGTTACAGTTGGATCAGTGTTTGTTTATTGGATAGCATCTGCAGGTCATGGGCCGTATTCTTCTGCTGCCCCAGCTGAGGAACAGAGTCCAAAAAACTTAAAATTGCTGTCTTGTTTTGCTCATGCAAATTGGCAATTGGGTGACCGGTGTCTTTTACACTCATCTGCACTGTCATCTTCTGTTTCCATCAACAAAAACAAATCAAAATTGGAACATAACGATTCTATTAACATTGAATTAGATTCTAATCAAACAGGAAGCGGATGTGATTCAGAAGACGCTACAGTTGAGGAATCAAATGGGAATAAAGATACTATGGACCTTGATCCAGTGGGTGCTTTGGAAGGGAATGATGGAAATGATAGAAATAATCCTTCTTGTGAATCTAGTTCATGTGGTAGTTCTATATCAGTATCAAAGGATCCTGTCCGTGAAGCTTGGCCTCTTCACCGCAAGAAAATAAGGAAAGTTGTCATCAGGAAAGAAAAGAGAGCCCGGAAGAAAGAGGAAAGCTTTGAAAAAGCTCTTCAAATTGTCAACACTAGGACAAGAATTGATGTTTCTTGGCAGGATGGAACGATAGAGTGTGGACTAGATTCTACAAGTTTAATTCCTATTGATACTCCTGGTGATCATGAATTTGTTTCAGAACAATATGTTGTAGAGAAGACCTCTGATGATGGTGAGGATAATTGTGAAACTAGCCGAGTTGGGGTGGTGAGGAGTGTTGATGCCAAAGAGCGGACAGCTTGTGTGAGGTGGATAAAACCAGCTGCCAAGGCAGATGATCCCCGAGAATTCGACAACGAGGAAATTGTAAGTGTCTACGAGCTAGAGGGCCATCCAGATTTTGAGTACTGCTATGGGGACGTGGTTGTTAGACTATCTCCTGTGTCTGTCTGTTTAGAAGCTTCTGTTGGAGAGTCTACTGAGAAATCGAAGCAGGAAAACGAAGAAAATGGACATAAAAATGAAGCAGCAACCCAGACAGAAAAAGCATCTTCTGGCGAAACTGATGTGGAGTTCTCAGACCTCTCTTGGGTTGGAAATATAACTGGCCTTAAGAATGGTGATATTGAAGTTACATGGGCTGATGGGATGGTATCAACGGTTGGACCCCAAGCAATCTATGTGGTTGGTAGAGATGATGATGCTGAATCACTTGCGGCAGGGAGTGATATAAGCGATGCTGCAACCTGGGAAACCGTTGATGATGATGAAATGGAAGTCCAAGAGGATTCCAGAGAGGATGTTAATAGGGAAAATTCAAGCAATGTTGCAGAAGAGAATGGAGAGAAAGACTCTGGTAGGGCCGCGGCACTTTCTGTCCCACTTGCAGCAATTCGATTTGTAACCCGACTTGCGTCTGGAATATTCTCCAGGGGACAGAAGAACTTGGATCCTGTTCACGTCCAGTCAAATGGTGAAATTGAATGTTCGTCACCAGTTAAAATTTGTGAGTCCAGTTCTCAGGAATATATTGCCATTGATGGTGACAATTTGGGCAGCAAGAGTTGTAAAAATGAGGAGTCTGTTATTCCAGAAGGTTTAGAAAATGTGGAAGCATCTGAGACACTTTGCAGCTTGAAGAATAAAGAGGCTCCTGCCAGTTGTGACAATGATGCTTGTAGTTTGAAACATTTTGACATGGTTACAGATCCGTTAGACCATTACTATATTGGTGCAAATGGACAGAGTAACATACGAAAATGGTATAAGAAGGTGCAACAAGATTGGGGCATACTACAAAACAACCTTCCTGAGGAAATCTATGTACGAGTTTATGAAGATAGAATGGATCTTGTGAGAGCAGTTATTATAGGGCCATTTGGGACTCCTTACCAAGATGGGCTGTTTTTCTTTGATTTTCACCTTCCCCCAGATTATCCTGATGTTCCACCGTCAGCATACTATCATTCAGGTGGTTGGCGTATTAACCCTAATTTGTATGAGGAAGGGAAGGTTTGCCTTAGCCTTCTAAACACATGGACAGGCAGAGGCAATGAAGTATGGGATCCAAAATCTTCTAGCATCCTTCAAGTTCTAGTTTCACTACAAGGGCTAGTACTCAACTCCAAGCCTTACTTCAATGAAGCTGGATATGATAAGCAGACTGGAACAGCTGAAGGAGAGAAGAATTCGTTATCATACAATGAGAATACATTTTTACTGAACTGCAAGACCATGATGTATCTTATGCGGAAGCCACCCAAGGATTTTGAAGTGCTCATCAAAGAACATTTTAGGAGGCGTGGTCATTACATTCTTAAGGCTTGTGATGCATATATGAAAGGCTACTTGATCGGCTCGTTGACTAGAGATGCCTCTGTGAGTGACAATAGCAGTCCGAATTCAACCTCTGTTGGTTTCAAGTTGATGTTGGCCAAGATAGTGCCAAAGCTTTTCGCGTCACTTAGTGAAGTTGGGGCTGATTGCGAGGAATTTAAGCATTTGAAAGAGTTGTAG 3315 0.419 MEVQQHEAHSENKEPAENANAEPDGVSCKKSNTMQIYRQDVVKNKNTGMVGIVTEVNGDSDSDSDSDSDTDSGVTDDEGEEGDVEEGDESNNGCRNSDRNDASVHRKTAALQTNELRVLWMDESESTQNFSDVEVVDRGFLHSDFVASASDPTGQVGVVVDVNISVDLLAHDGSIIKDVSSKDLKRIRDFTAGDYVVLGSWLGKVDDVLDNVTVLFDDGSVCKVSKADPMDLKPISKNNILEDGHFPYYPGQRVRAKSSSIFKMARWLSGLWKASRLEGTVTNVTVGSVFVYWIASAGHGPYSSAAPAEEQSPKNLKLLSCFAHANWQLGDRCLLHSSALSSSVSINKNKSKLEHNDSINIELDSNQTGSGCDSEDATVEESNGNKDTMDLDPVGALEGNDGNDRNNPSCESSSCGSSISVSKDPVREAWPLHRKKIRKVVIRKEKRARKKEESFEKALQIVNTRTRIDVSWQDGTIECGLDSTSLIPIDTPGDHEFVSEQYVVEKTSDDGEDNCETSRVGVVRSVDAKERTACVRWIKPAAKADDPREFDNEEIVSVYELEGHPDFEYCYGDVVVRLSPVSVCLEASVGESTEKSKQENEENGHKNEAATQTEKASSGETDVEFSDLSWVGNITGLKNGDIEVTWADGMVSTVGPQAIYVVGRDDDAESLAAGSDISDAATWETVDDDEMEVQEDSREDVNRENSSNVAEENGEKDSGRAAALSVPLAAIRFVTRLASGIFSRGQKNLDPVHVQSNGEIECSSPVKICESSSQEYIAIDGDNLGSKSCKNEESVIPEGLENVEASETLCSLKNKEAPASCDNDACSLKHFDMVTDPLDHYYIGANGQSNIRKWYKKVQQDWGILQNNLPEEIYVRVYEDRMDLVRAVIIGPFGTPYQDGLFFFDFHLPPDYPDVPPSAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQTGTAEGEKNSLSYNENTFLLNCKTMMYLMRKPPKDFEVLIKEHFRRRGHYILKACDAYMKGYLIGSLTRDASVSDNSSPNSTSVGFKLMLAKIVPKLFASLSEVGADCEEFKHLKEL* 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4306 1104 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 853 1013 IPR000608 -
Mtr1g4306 1104 SMART ubc_7 856 1013 - -
Mtr1g4306 1104 MobiDBLite consensus disorder prediction 692 721 - -
Mtr1g4306 1104 CDD UBCc 855 1006 IPR000608 -
Mtr1g4306 1104 MobiDBLite consensus disorder prediction 1 106 - -
Mtr1g4306 1104 MobiDBLite consensus disorder prediction 360 378 - -
Mtr1g4306 1104 MobiDBLite consensus disorder prediction 589 623 - -
Mtr1g4306 1104 MobiDBLite consensus disorder prediction 402 421 - -
Mtr1g4306 1104 Pfam Ubiquitin-conjugating enzyme 859 1001 IPR000608 -
Mtr1g4306 1104 MobiDBLite consensus disorder prediction 1 18 - -
Mtr1g4306 1104 MobiDBLite consensus disorder prediction 25 42 - -
Mtr1g4306 1104 MobiDBLite consensus disorder prediction 358 421 - -
Mtr1g4306 1104 Gene3D Ubiquitin Conjugating Enzyme 822 1086 IPR016135 -
Mtr1g4306 1104 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 3 1102 - -
Mtr1g4306 1104 MobiDBLite consensus disorder prediction 88 105 - -
Mtr1g4306 1104 MobiDBLite consensus disorder prediction 60 87 - -
Mtr1g4306 1104 MobiDBLite consensus disorder prediction 696 718 - -
Mtr1g4306 1104 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 23-RELATED 3 1102 - -
Mtr1g4306 1104 SUPERFAMILY UBC-like 840 1020 IPR016135 -
Mtr1g4306 1104 MobiDBLite consensus disorder prediction 592 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4306 Mtr-Chr1 54731567 54738747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4306 137 339 Miscellaneous Gene Families AT2G33770 40.196 1.72e-43 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4306 K10581 - gmx:100809513 1639.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4306 1 54731567 54738747 Mtr1g4306 1 54731567 54738747 ECH