Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4095 ATGCCAAACCTCTTATTTCTTTGCATAACTATCACCATTTGTCTTTCAACTTTCGACACCAATTTCCTTGTACAATCCCTCACTTCACCCTCAGACATTGAAGCTCTCAAAGCCTTCAAAGCTTCAATCAAACCCTCATCCATCACACCATGGTCATGTGTAGCATCATGGAACTTCACCATTGATCCATGCTCACACCCTCGTCGCACTTACTTCTTATGTGGTTTCACCTGCACCACAGATTCCACACACATCAACCAAATCACACTAGACCCTGCAAGCTACTCAGGCTCACTCACGCCACTCATCTCTAAACTCACCCAACTCATCACACTAGACCTCTCTGATAACAACTTCTTTGGCTCAATTCCTTCTTCAATCTCTTCCCTTTCCAACCTCAAAACCTTAACTCTCCGATCCAATTCCTTCTCTGGTCCAATCCCTCCATCCATAATCTCACTCAAATCACTTGAATCTCTTGATCTTTCACACAATTCCCTAACTGGGTCTCTCCCAAACTCATTGAATTCTCTCATAAATCTTCACAGAATCGATTTGAGCTTCAATAAACTCGCCGGTTCGATCCCAAAACTACCACCCAATTTACTAGAACTGGCAATCAAGGCAAATTCTTTATCCGGGCCTCTTCAAAAAACAACCTTTGAAGGATCTAACCAATTAGAAGTTGTGGAGCTCAGCGAGAATGCTCTCACCGGAACAATTGAAACATGGTTCTTGCTTTTGTCATCACTGCAACAAGTGAATTTAGCAAACAACAGTTTCACGGGGATTCAGATCTCAAAACCCGCACGTGGTGTAGAAAGCAATCTCGTGGCATTGAACTTAGGATTTAACAGAATCCAAGGTTACGCGCCCGCGAATCTCGCTGCATATCCATTGCTGTCGTTTTTGTCGATTCGTCACAACTCGCTACGTGGCAATATACCATTGGAGTATGGACAGATAAAGAGTATGAAGAGGTTGTTCTTGGATGGAAACTTCTTTGACGGCAAGCCGCCGCCGGCGTTGTTGGCTGCCGGAGCTACGGTTTCCGGTAGCTTGGGGGATAATTGTCTGCAGGTATGTCCAGTTTCTTCACAGATGTGCGCGCCGGCACAGAAACCCAGCTCCGTTTGCAAACGAGGTTATCGTGGAAGAACATAG 1164 0.4502 MPNLLFLCITITICLSTFDTNFLVQSLTSPSDIEALKAFKASIKPSSITPWSCVASWNFTIDPCSHPRRTYFLCGFTCTTDSTHINQITLDPASYSGSLTPLISKLTQLITLDLSDNNFFGSIPSSISSLSNLKTLTLRSNSFSGPIPPSIISLKSLESLDLSHNSLTGSLPNSLNSLINLHRIDLSFNKLAGSIPKLPPNLLELAIKANSLSGPLQKTTFEGSNQLEVVELSENALTGTIETWFLLLSSLQQVNLANNSFTGIQISKPARGVESNLVALNLGFNRIQGYAPANLAAYPLLSFLSIRHNSLRGNIPLEYGQIKSMKRLFLDGNFFDGKPPPALLAAGATVSGSLGDNCLQVCPVSSQMCAPAQKPSSVCKRGYRGRT* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4095 387 Gene3D Ribonuclease Inhibitor 30 198 IPR032675 -
Mtr1g4095 387 SMART LRR_typ_2 178 205 IPR003591 -
Mtr1g4095 387 SMART LRR_typ_2 154 177 IPR003591 -
Mtr1g4095 387 SMART LRR_typ_2 248 269 IPR003591 -
Mtr1g4095 387 SMART LRR_typ_2 106 130 IPR003591 -
Mtr1g4095 387 PRINTS Leucine-rich repeat signature 157 170 - -
Mtr1g4095 387 PRINTS Leucine-rich repeat signature 178 191 - -
Mtr1g4095 387 SUPERFAMILY L domain-like 29 340 - -
Mtr1g4095 387 ProSiteProfiles Leucine-rich repeat profile. 156 178 IPR001611 GO:0005515
Mtr1g4095 387 Gene3D Ribonuclease Inhibitor 199 363 IPR032675 -
Mtr1g4095 387 Pfam Leucine Rich Repeat 132 152 IPR001611 GO:0005515
Mtr1g4095 387 Pfam Leucine Rich Repeat 109 130 IPR001611 GO:0005515
Mtr1g4095 387 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 23 386 - -
Mtr1g4095 387 Pfam Leucine rich repeat 200 260 IPR001611 GO:0005515
Mtr1g4095 387 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 23 386 - -
Mtr1g4095 387 Pfam Leucine Rich repeats (2 copies) 155 199 IPR025875 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4095 Mtr-Chr1 52490311 52492120 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4095 96 359 Receptor kinase-like Gene Family AT5G06940 35.274 1.66e-33 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4095 - - lja:Lj5g3v2113590.1 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4095 1 52490311 52492120 Mtr1g4095 1 52490311 52492120 ECH