Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4091 ATGGCCGCCGCTAACGCTACTTCCCAAACCCTCCGACTCCCTTCACAATCCTCCCTTGCTCTCTCCTCCAAACTCCCTCTCTCCTCCGCCTTCTCCGTCTCCCTCCGCCCTCACAACCCCCGCCGTTCACTCGTCGTCTTCGTCTCTTCTTCCCTCGACGCTAAACCCACCGTCCTCGTCGCTGAAAAGCTCGGCGAAGCTGGTCTCACTCTTCTCAAAGATTTCGCCAACGTTGACTGCTCTTACAATCTCACTCCTGAGGAGCTTTGCACCAAGATCTCTCTCTGTGATGCTCTCATCGTTCGCAGTGGTACCAAAGTCTCACGCGAAGTGTTTGAATCTTCCGGTGGAAGACTCAAGGTTGTTGGTAGAGCTGGTGTTGGTATTGATAACGTGGATCTGGCCGCCGCTACTGAACATGGTTGCTTGGTTGTTAATGCTCCCACTGCTAACACTGTTGCCGCCGCTGAACACGGGATCGCGCTCTTGGCTGGCATGGCTAGAAATGTTGCTCAGGCTGATGCTTCTATCAAAGCTGGGAAATGGGAGAGAAGTAAGTATGTTGGAGTTTCCCTAGTTGGGAAGACACTTGCTGTAATGGGATTTGGGAAGGTTGGAACTGAGGTTGCTAGGCGTGCTAAGGGGCTTGGTATGAAGGTTATTGCTCATGATCCTTATGCTCCTGCTGATCGTGCTCATGCTATTGGTGTCGAGCTTGTGAGCTTTGAGGAGGCCATTGCCACCGCTGATTTCATCTCTTTGCACATGCCGCTTACGCCTGCTACTAATAAGATGCTCAATGATGAGACTTTTGCCAAGATGAAGAAAGGAGTTAGAATTGTTAATGTTGCTCGTGGTGGAGTCATTGACGAGGATGCACTTGTTAGAGCATTGGATTCTGGAATTGTAGCTCAGGCGGCTCTTGATGTTTTCACGGTGGAACCACCCTCCAAAGACAGCAAGTTGGTTATGCATGAGCTAGTTACTGCAACACCTCATCTTGGTGCCAGTACCATGGAAGCTCAGGAAGGTGTGGCTATTGAAATAGCAGAAGCTGTTGTTGGGGCTTTGAAAGGGGAGCTTGCTTCTACTGCAGTCAATGCACCAATGGTTTCCTCAGAGGTGTTAACAGAGCTTAAACCATTTGTTGATCTTGCTGAGAAACTGGGTAGGCTGGCTGTCCAACTGGTAGCAGGAGGAAGCGGTGTAAAGACAGTGAAAGTGACTTACGCTTCCGCTAGGGCCCCTGATGATCTTGACACTCGTCTTCTTCGTGCTATGATAACAAAGGGTCTGATTGAGCCCATATCCAGTGTTTTCGTGAACTTAGTTAATGCTGACTTCACCGCTAAACAAAGAGGGCTAAGAATTACTGAGGAGAGAGTTATTCTTGATGGTTCACCTGAGAATCCACTTGAATTCATTCAAGTCCAGATTGCTAACGTGGAATCTCGATTTGCTAGTGCCATATCAGATTCAGGGGAGGTCACAGTGGAGGGTCGCGTGAAAGATGGTGTCCCCCATCTTACAAAGGTTGGATCTTTTGAAGTTGATGTGAGTTTAGAAGGTAGCATTATACTTTGCAGGCAAGTAGATCAACCAGGTATGATTGGAAAGGTGGGAAGCATCTTGGGTGAAGAGAATGTGAATGTCAGCTTCATGAGTGTTGGAAGGATTGCTCCACGCAAGCAAGCTGTGATGGCAATCGGAGTTGATGAGCAACCACGCAAAGAATCTTTGCAAAGGATTGGAGACATTCCTGCTGTTGAAGAATTCGTTTTCCTCAAGTTGTAA 1794 0.4844 MAAANATSQTLRLPSQSSLALSSKLPLSSAFSVSLRPHNPRRSLVVFVSSSLDAKPTVLVAEKLGEAGLTLLKDFANVDCSYNLTPEELCTKISLCDALIVRSGTKVSREVFESSGGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLAGMARNVAQADASIKAGKWERSKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMKVIAHDPYAPADRAHAIGVELVSFEEAIATADFISLHMPLTPATNKMLNDETFAKMKKGVRIVNVARGGVIDEDALVRALDSGIVAQAALDVFTVEPPSKDSKLVMHELVTATPHLGASTMEAQEGVAIEIAEAVVGALKGELASTAVNAPMVSSEVLTELKPFVDLAEKLGRLAVQLVAGGSGVKTVKVTYASARAPDDLDTRLLRAMITKGLIEPISSVFVNLVNADFTAKQRGLRITEERVILDGSPENPLEFIQVQIANVESRFASAISDSGEVTVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGKVGSILGEENVNVSFMSVGRIAPRKQAVMAIGVDEQPRKESLQRIGDIPAVEEFVFLKL* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4091 597 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 161 335 IPR006140 GO:0051287
Mtr1g4091 597 SUPERFAMILY ACT-like 515 594 IPR045865 -
Mtr1g4091 597 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 58 367 IPR006139 GO:0016616|GO:0051287
Mtr1g4091 597 PANTHER FORMATE DEHYDROGENASE 1 29 592 - -
Mtr1g4091 597 PANTHER D-3-PHOSPHOGLYCERATE DEHYDROGENASE 29 592 - -
Mtr1g4091 597 CDD ACT_3PGDH-xct 526 597 - -
Mtr1g4091 597 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 274 290 IPR029753 -
Mtr1g4091 597 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 245 267 IPR029753 -
Mtr1g4091 597 Pfam D-3-phosphoglycerate dehydrogenase intervening domain 378 481 IPR045626 -
Mtr1g4091 597 SMART AdoHcyase_NAD_2 185 332 IPR015878 -
Mtr1g4091 597 ProSiteProfiles ACT domain profile. 525 597 IPR002912 -
Mtr1g4091 597 CDD PGDH_4 58 360 - -
Mtr1g4091 597 Gene3D - 370 523 IPR029009 -
Mtr1g4091 597 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 55 188 - -
Mtr1g4091 597 Gene3D - 524 597 - -
Mtr1g4091 597 Gene3D - 60 360 - -
Mtr1g4091 597 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 197 224 IPR029752 -
Mtr1g4091 597 Gene3D - 151 333 - -
Mtr1g4091 597 Pfam ACT domain 525 586 IPR002912 -
Mtr1g4091 597 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 154 336 IPR036291 -
Mtr1g4091 597 TIGRFAM PGDH: phosphoglycerate dehydrogenase 58 595 IPR006236 GO:0004617|GO:0006564
Mtr1g4091 597 SUPERFAMILY Serine metabolism enzymes domain 373 519 IPR029009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4091 Mtr-Chr1 52469130 52472525 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4091 K00058 - gmx:100808771 994.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4091 1 52469130 52472525 Mtr1g4091 1 52469130 52472525 ECH