Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4079 ATGTCTTCAGAAGACACAGAAATCAAACCAGAAATTCATGTCCTATTGGTTGCGTTTTCAGCTCAAGGTCACATAAACCCTTTACTTAGACTAGGCAAATCCCTATTAACCAAAGGCCTTAATGTCACACTTGCCACCACTGAATTAGTTTACCACCGTGTCTTCAAATCAACCACCACCGACACAGACACCGTCCCAACCTCTTACTCCACCAATGGAATCAACGTCCTGTTTTTCTCCGACGGCTTCGACATATCTCAAGGCCATAAAAGCCCTGATGAATACATGGAACTCATAGCCAAATTCGGTCCCATTAGCCTCACAAATCTCATCAATAACAATTTCATCAACAACCCTTCCAAAAAATTAGCTTGCATTATCAATAACCCTTTTGTTCCTTGGGTAGCAAACGTGGCTTATGAATTGAATATCCCATGTGCTTGTCTTTGGATTCAACCTTGTACCCTTTACTCCATATACTATCGTTTCTACAACGAACTCAACCAGTTTCCAACCCTAGAAAACCCCGAAATCGACGTGGAATTACCCGGTCTTCCATTGCTGAAACCACAAGACCTTCCATCTTTTATTCTTCCATCAAATCCTATAAAAACCATGTCCGATGTTTTAGCTGAAATGTTCCAAGACATGAAGAAACTGAAATGGGTATTAGCAAATTCTTTCTACGAATTGGAAAAAGATGTCATTGATTCAATGGCTGAGATTTTCCCAATTACACCTGTAGGCCCATTAGTTCCACCTTCATTACTAGGTCAAGATCAAAAACAAGACGTTGGAATTGAAATGTGGACTCCCCAAGATTCTTGCATGGAATGGCTTAACCAAAAGCTACCATCTTCAGTTATATATATTTCATTCGGAAGTCTCATTTTTTTATCAGAAAAACAAATGCAAAGCATAGCAAGTGCATTGAAAAACAGTAACAAATATTTTCTCTGGGTGATGAAGAGTAATGATATTGGGGCTGAAAAAGTTCAGCTGTCTGAAAAATTCTTAGAAGAAACAAAAGAGAAAGGATTGGTTGTTACATGGTGTCCACAAACTAAGGTTTTGGTTCATCCTGCAATAGCGTGTTTCTTAACACACTGTGGATGGAATTCTACATTGGAAGCTATAACTGCAGGAGTACCTATGATTGGTTATCCACAATGGACTGATCAACCAACAAATGCAACACTTGTTTCTGATGTTTTTCGTATGGGGATCCGGTTGAAACAGGACAATGATGGGTTTGTTGAAAGTGATGAAGTTGAAAGAGCCATTGAAGAAATTGTTGGAGGAGAAAGGTCTGAAGTGTTTAAGAAAAATGCGTTGGAGCTGAAACATGCGGCGAGGGAGGCGGTGGCTGATGGTGGCTCTTCTGACAGGAATATACAAAGATTCGTTGATGAAATTCTTGTCACTGCAATTGATAGTAATAATTGA 1446 0.3949 MSSEDTEIKPEIHVLLVAFSAQGHINPLLRLGKSLLTKGLNVTLATTELVYHRVFKSTTTDTDTVPTSYSTNGINVLFFSDGFDISQGHKSPDEYMELIAKFGPISLTNLINNNFINNPSKKLACIINNPFVPWVANVAYELNIPCACLWIQPCTLYSIYYRFYNELNQFPTLENPEIDVELPGLPLLKPQDLPSFILPSNPIKTMSDVLAEMFQDMKKLKWVLANSFYELEKDVIDSMAEIFPITPVGPLVPPSLLGQDQKQDVGIEMWTPQDSCMEWLNQKLPSSVIYISFGSLIFLSEKQMQSIASALKNSNKYFLWVMKSNDIGAEKVQLSEKFLEETKEKGLVVTWCPQTKVLVHPAIACFLTHCGWNSTLEAITAGVPMIGYPQWTDQPTNATLVSDVFRMGIRLKQDNDGFVESDEVERAIEEIVGGERSEVFKKNALELKHAAREAVADGGSSDRNIQRFVDEILVTAIDSNN* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4079 481 ProSitePatterns UDP-glycosyltransferases signature. 351 394 IPR035595 -
Mtr1g4079 481 Gene3D Glycogen Phosphorylase B; 264 453 - -
Mtr1g4079 481 Gene3D Glycogen Phosphorylase B; 17 465 - -
Mtr1g4079 481 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 11 476 - -
Mtr1g4079 481 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 12 472 - -
Mtr1g4079 481 CDD GT1_Gtf-like 13 454 IPR002213 GO:0008194
Mtr1g4079 481 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 286 448 IPR002213 GO:0008194
Mtr1g4079 481 PANTHER GLYCOSYLTRANSFERASE-RELATED 11 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4079 Mtr-Chr1 52354487 52356247 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4079 16 475 Glycosyltransferase AT2G23250 44.902 5.43e-135 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4079 K13692 - gmx:100778995 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4079 1 52354487 52356247 Mtr1g4079 1 52354487 52356247 ECH