Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4049 ATGGCCGTCGATATCTTAACCTTAGAAAACAGGTATATTGATTCTTGCAGGAGACATGGTGTTTTGCCTCATGCTGCTATTTTGTCAAGCTTTTTCAAGGCTGAGGGCAAAAAATCCCACCAAGAGCTGATTGTCCTGGACATTTTAATTGACGAACTTAAGGATATTGATTTTGCTCCACTCTTGGAGATATGCACGAGCCTTGACACTACTGAAGTAGAAGCTGTTGATGTACACAATGAATCACCATGTGTATTAAGTGGAGAATATGTATTACCGTTGATGCGTGCTGTTAAGCAAAAGCTTCGAATAGTTGAACTACGGGATATGTCATTTGCAAAAGACTTCGTACGAGATATCTCACAAAGAGGTTTGGCATGCCAAGTTCTGACAATAAGGTCTTGGCATTTTCGGAAATTGAGCTTGATGGGGGAGTTCATCCACATGCACACACTTAATCTTGATTTCAGTTCTTACCTTACCAGTTTCGAAGAAGACTGTTTTAATTGCATGCCAAATCTAACGTGTCTCTCAATGTGTGAAACAAGGATTTCAAATCTTTGGACAACTATTGCAGCTCTCTCTAAGCTTCCTTCTTTGGTTCAACTAAGGTTTCAATATTGGCAGTATTGTAATGATACGGGAACGTCTTTTACCTCATCCAGTGGGAAGTCAGATGCCACTGCTGATTTTAGACAACTTGATAGAGTTCCTTTTATTGGTGAATCCCGCATTGATACAACGGAACTAACAGATCTTAACATTAGTGTTGAGGATCCACTTAGAAATGTTTATTCCTTTGATGAAGTTATGAGTTATGATGTTCAAAGCATGGTTGAGGACTCATCAGATGATAGTGAAATTGATTTGACAAATCATCATCCTAGAAACTGGTTGTCAGATGTTTTTCCTAGGTGGGGTTTACAAATGCCTCCTAAGAGCGAGAATGAAGTAGAGTCATCGAGCAGGTCCTTTACAGAAAATGGTGTTGATGTTTCTATGAAATATATGTCTCGTCACGCGTCACCAATATGTCAACAAAAACATTACAGAGAATTTATGATAGCTTCATTACCGAATCTGAAAAGTTTAGATAATCTGCCTATCAGAAATATTGACAAAGAAAGTGCTGCTGGAATATTTTCTCAATACTTTGAATATCTTCCATACAGATGGAAGAGCAGAGAGAGTGTTTTAAGTATCTTACACAAGCGAGAAACAAAATCAGGCCGCATTAAGGTGCAATCTTCTAAGTGTCGCCCATCACATCCTTCTGGAACGTCTCAACATTTTTATACTAGGTCTCTTTCTGCTGCTAAACTGGGGTCTTCAACTTGGCCTTCCTTACATCCCCTTTCTGTATCAGGATTTGATTTAGATAAGGGCTTTCGTCCAAGGCAGTTTGAGTATCACCCATCTGACTCCAGCTTGATGGTCTTTGGAACTTTAGATGGCGAAGTAGTTGTCATTAATCATGAGAGTGAACGCATTGTGAATTATATCCCATCACTTGGCGCAATGAATAGTGTCTTGGGTCTCTGTTGGCTCAAGAAATATCCTTCTAAGCTTATAGCAGGTTCAGATAATGGCTCCCTGAAATTGTATGACATCAACCATATACCAAGAAAAATTACTGGATTATATGGGAACTCTGGTTGTGTTACCTTTGACGAATTTGACCAGTTGACATCTGTTCATGTTAACGCTACGGATGAACTATTTCTTGCAAGTGGTTACTCAAGAAATGTTGCTTTGTATGACATCAACAGCGGAAAGCGCTTACAAGTTTTCACAGATATGCATCGCGGGCATATTAATGTAGTCAAGTTTGCAAATCATTCCCCGTCAATTTTTGCTACTTCATCATTTGATCAGGATGTCAAGATGTGGGACTTGAGACAGAAACCAATACAGCCTTGCTTCACTGCTTCTAGCTCTAAAGGAAATGTCATGGTCTGTTTTTCTCCAGATGACCAATATATTCTAGCATCGGCAGTTGATAATGAGGTTAGACAATTTCTGGCTGTTGATGGTAGGCTTCACTTAGTTTTTGATATAGCTCCAACTGAAAGTTCTCAAAATTACACCCGGTCTTATTACATGAATGGAAGGGACTACATCATCAGTGGAAGTTGTGATGAACACATTGTCCGTATTTGCTGTGCTCAAACAGGGAGACGCCTGAGAGATATTTCCCTGGAGGTATGCCAATTATCTAATTTACTTAACTGGCAACCATCTCTAATTACAATCGATGCTTTGACTATTGTGCTTTTATTCATTGCTCCATATTATTGTGATTACTTGTTTACTTCTATGCAGGGTAAAAGCTTAGGAAGATCCATGTTTGTTCAATCTTTGAGAGGCGATCCTTTCAGGGATTTCAATATGAGTGTGTTAGGAGCCTACATGCGGCCTGGCTCCAACTCTGAAATTGTCAAGATCAACTTACTAGCATGTAATGGCCGTGCCAAGGACGACTCTGATGACCATCCTGTATGCCCATCAAACATTATGGGAGCTTGA 2526 0.3963 MAVDILTLENRYIDSCRRHGVLPHAAILSSFFKAEGKKSHQELIVLDILIDELKDIDFAPLLEICTSLDTTEVEAVDVHNESPCVLSGEYVLPLMRAVKQKLRIVELRDMSFAKDFVRDISQRGLACQVLTIRSWHFRKLSLMGEFIHMHTLNLDFSSYLTSFEEDCFNCMPNLTCLSMCETRISNLWTTIAALSKLPSLVQLRFQYWQYCNDTGTSFTSSSGKSDATADFRQLDRVPFIGESRIDTTELTDLNISVEDPLRNVYSFDEVMSYDVQSMVEDSSDDSEIDLTNHHPRNWLSDVFPRWGLQMPPKSENEVESSSRSFTENGVDVSMKYMSRHASPICQQKHYREFMIASLPNLKSLDNLPIRNIDKESAAGIFSQYFEYLPYRWKSRESVLSILHKRETKSGRIKVQSSKCRPSHPSGTSQHFYTRSLSAAKLGSSTWPSLHPLSVSGFDLDKGFRPRQFEYHPSDSSLMVFGTLDGEVVVINHESERIVNYIPSLGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDINHIPRKITGLYGNSGCVTFDEFDQLTSVHVNATDELFLASGYSRNVALYDINSGKRLQVFTDMHRGHINVVKFANHSPSIFATSSFDQDVKMWDLRQKPIQPCFTASSSKGNVMVCFSPDDQYILASAVDNEVRQFLAVDGRLHLVFDIAPTESSQNYTRSYYMNGRDYIISGSCDEHIVRICCAQTGRRLRDISLEVCQLSNLLNWQPSLITIDALTIVLLFIAPYYCDYLFTSMQGKSLGRSMFVQSLRGDPFRDFNMSVLGAYMRPGSNSEIVKINLLACNGRAKDDSDDHPVCPSNIMGA* 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4049 841 SUPERFAMILY WD40 repeat-like 464 731 IPR036322 GO:0005515
Mtr1g4049 841 SMART LRRcap_2 347 365 IPR003603 -
Mtr1g4049 841 SMART WD40_4 590 631 IPR001680 GO:0005515
Mtr1g4049 841 SMART WD40_4 636 674 IPR001680 GO:0005515
Mtr1g4049 841 SMART WD40_4 549 587 IPR001680 GO:0005515
Mtr1g4049 841 SMART WD40_4 494 536 IPR001680 GO:0005515
Mtr1g4049 841 ProSiteProfiles Trp-Asp (WD) repeats profile. 598 633 IPR001680 GO:0005515
Mtr1g4049 841 Gene3D Ribonuclease Inhibitor 93 249 IPR032675 -
Mtr1g4049 841 Gene3D - 462 751 IPR015943 GO:0005515
Mtr1g4049 841 PANTHER BNAC09G30780D PROTEIN 2 827 IPR046377 GO:0071493|GO:0080008
Mtr1g4049 841 SUPERFAMILY RNI-like 90 365 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4049 517 680 Miscellaneous Gene Families AT5G08390 27.439 2.40e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4049 - - gmx:100806443 1256.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4049 1 52081851 52089583 Mtr1g4049 1 52081851 52089583 ECH