Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4040 ATGACAAAAATGGCACCTTCCATTCCCTTCTCTGTCTTATTTATCCTTCTTCTCCAGTTTCCCTTCCAAACCATCACAGCCAACTCCGAAGGGAATGCTCTTCATGTTTTTAGGAACAGTCTTTCTGACCCCAACAATGTGCTTCAGAGCTGGGACCCAACATTGGTTAATCCATGTACTTGGTTTCATGTTACATGTGACTCCAACAACCGTGTGTCACGCTTAGACTTGGGTAATGCTGGTCTTTCTGGATCTCTAGGCTCAGAGCTTGGCCACCTACACCATTTGCAGTATCTGGAGTTGTATGGGAATGACTTGAGAGGAAAGATTCCTAAGGAACTTGGAAAATTGAAAGAACTTATTAGCATGGATTTGTATTATAACAAGTTGGAGGGGAAAATCCCAAAGTCATTTGGCAAGTTGAAGTCATTAAGATTCTTGCGGCTGAACAACAACAACTTGACAGGATCTATCCCAAGAGAACTCACTCGTCTCACTCATCTCGAAGTCTTTGATGTTTCTAATAATGACCTTTGTGGAACAATACCAGTAGATGGCAACTTTGGATCCTTCCCAATAAAAAGTTTTGAAAATAACAGACTCAGTGGTCCGGAACTGAAAGGACTTGTTCCGTATGATTTTGGATGTTGA 651 0.4163 MTKMAPSIPFSVLFILLLQFPFQTITANSEGNALHVFRNSLSDPNNVLQSWDPTLVNPCTWFHVTCDSNNRVSRLDLGNAGLSGSLGSELGHLHHLQYLELYGNDLRGKIPKELGKLKELISMDLYYNKLEGKIPKSFGKLKSLRFLRLNNNNLTGSIPRELTRLTHLEVFDVSNNDLCGTIPVDGNFGSFPIKSFENNRLSGPELKGLVPYDFGC* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4040 216 Gene3D Ribonuclease Inhibitor 26 208 IPR032675 -
Mtr1g4040 216 Pfam Leucine rich repeat 120 178 IPR001611 GO:0005515
Mtr1g4040 216 PANTHER LRR AMINO-TERMINAL DOMAIN PROTEIN 12 213 - -
Mtr1g4040 216 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 12 213 - -
Mtr1g4040 216 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Mtr1g4040 216 SUPERFAMILY L domain-like 28 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4040 Mtr-Chr1 52004485 52007039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4040 12 204 Receptor kinase-like Gene Family AT1G71830 59.799 1.39e-69 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4040 - - gmx:100816279 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4040 1 52004485 52007039 Mtr1g4040 1 52004485 52007039 ECH
Mtr5g0023 5 262220 264445 Mtr1g4040 1 52004485 52007039 PCT