Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4027 ATGTCTTCTTCGCTCTCACCATCACTCTCTTCACCATTCATCCACGATTCTTCAACTACTCGCCATGGAACTAAGCTTCTTCCTTTTCCTCACGCCACTGCCACACGAAAACCGCGATGCTTCAAGTCCTTTTCTTTCAACTGCTCCCTCGACCGCATCCCCAAGCAGTTCAGACAGGAAAATCTCAAAGATGGATTGATGGACAATTACAAGAATGCACCACAATTTCTATATGGTCTTAATCCCTCGCAAATGGACATGTTCATAAATGCAGACAATCCTATGCATCAGATGTCTGAAAGAGTTACAGAGGAAAGCATTTCATCTGCCAAAAGTTATTTGGCTCATAGTGGGATGGGTGGTGTATCTAGCATGGATACTAATGCATCTTCAAGACACAGCATGAGTGTTAGTATGTACAGAGGAGGTAGGGGAACAGGAAGGCCTAGAAATGCTCCACCGGATTTGCCTTCTTTGCTCTTGGATTCTCGGATATGTTATCTTGGTATGCCGATTGTACCAGCTGTGACAGAACTTATTCTGGCTCAACTTATGTGGTTGGATTATGATAACCCTGCCAAACCTGTTTATGTATATATTAATTCGTCTGGAACTCAGAATGAGAAGAACGAGACCGTGGGATCAGAAACTGATGCTTATTCCATCGCTGATATGATTTCTCATATCAAATCTGATGTCTACACTGTGAATTTGGCCATGGCGTATGGCCAAGCAGCAATGATTCTGTCTCTTGGAAAAAAGGGTTATCGTGCTGTACTGCCACATTCATCCGCAAAAGTATTTCTCCCGAAAGTCCACAGATCAAGTGGTTCTGTTGCAGATATGTGGATTAAGGCAAAAGAGCTGGAGGCAAATTCTGAGTATTACATTGAGCTGTTGGCAAAAGGAACGGGGAAGTCAAAGGAAGAGATTGCTAAAGACGTCCAGAGGACTAGATATTTCCAACCACAGGATGCCATAGAATACGGACTCGCTGACAAAATAATGCATTCAATGGATGGGGAAAATGCATATAAGAAGCGGAATTATGATGAAATACGTGCTCAAAGAGCACTGCGGAGAGGTGGTGGGAACCCTCAAGCGGCTCCTTCAGGACGTTAG 1122 0.4376 MSSSLSPSLSSPFIHDSSTTRHGTKLLPFPHATATRKPRCFKSFSFNCSLDRIPKQFRQENLKDGLMDNYKNAPQFLYGLNPSQMDMFINADNPMHQMSERVTEESISSAKSYLAHSGMGGVSSMDTNASSRHSMSVSMYRGGRGTGRPRNAPPDLPSLLLDSRICYLGMPIVPAVTELILAQLMWLDYDNPAKPVYVYINSSGTQNEKNETVGSETDAYSIADMISHIKSDVYTVNLAMAYGQAAMILSLGKKGYRAVLPHSSAKVFLPKVHRSSGSVADMWIKAKELEANSEYYIELLAKGTGKSKEEIAKDVQRTRYFQPQDAIEYGLADKIMHSMDGENAYKKRNYDEIRAQRALRRGGGNPQAAPSGR* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4027 373 MobiDBLite consensus disorder prediction 1 24 - -
Mtr1g4027 373 Gene3D - 127 340 - -
Mtr1g4027 373 PRINTS Clp protease catalytic subunit P signature 155 170 IPR001907 GO:0004176|GO:0004252|GO:0006508
Mtr1g4027 373 PRINTS Clp protease catalytic subunit P signature 195 215 IPR001907 GO:0004176|GO:0004252|GO:0006508
Mtr1g4027 373 PRINTS Clp protease catalytic subunit P signature 235 252 IPR001907 GO:0004176|GO:0004252|GO:0006508
Mtr1g4027 373 PRINTS Clp protease catalytic subunit P signature 256 275 IPR001907 GO:0004176|GO:0004252|GO:0006508
Mtr1g4027 373 PRINTS Clp protease catalytic subunit P signature 314 333 IPR001907 GO:0004176|GO:0004252|GO:0006508
Mtr1g4027 373 SUPERFAMILY ClpP/crotonase 151 340 IPR029045 -
Mtr1g4027 373 MobiDBLite consensus disorder prediction 1 26 - -
Mtr1g4027 373 Pfam Clp protease 157 337 IPR023562 -
Mtr1g4027 373 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 42 362 IPR023562 -
Mtr1g4027 373 CDD S14_ClpP_2 155 335 IPR001907 GO:0004176|GO:0004252|GO:0006508
Mtr1g4027 373 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 1, CHLOROPLASTIC 42 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4027 Mtr-Chr1 51865555 51870164 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4027 K01358 - gmx:100820008 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4027 1 51865555 51870164 Mtr1g4027 1 51865555 51870164 ECH