Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4021 ATGAAAAATCATCTTTTGTTCTTATGCATTTTCTTTTCATTTTTTATTCTTCCAATTACTAGTCAAAAACATGCATGTGACAAAGGCTCTCCTAAAACTAGCAACTTTCCATTTTGCAACACTTCACTATCTTATGAAACCAGAGCCAAGGACTTAGTGTCACGCTTAACACTTCAAGAAAAAGCACAACAGCTGGTAAACCCTTCTACCGGCATATCAAGGCTTGGTGTTCCTGCTTATGAATGGTGGTCAGAGGCACTTCATGGTGTCTCTAATGTAGGACCAGGGACGCGTTTCGATAGCAGGGTACCCGGTGCTACTAGCTTTCCAGCAGTGATACTATCAGCTGCTAGTTTTAATGAAACATTATGGTACACAATGGGACAAGTTGTGTCAAATGAAGCTAGAGCTATGTACAATGTGGATCTGGCTGGTTTGACATTTTGGAGCCCTAATGTGAATGTTTTTCGCGATCCGAGGTGGGGGCGTGGACAAGAAACTCCAGGGGAAGATCCTTTGGTTGTTTCTAGATATGCTGTAAATTATGTCCGTGGACTACAAGAAGTTGGTGATGAAGCAAGTGCTAAAGGTGATAGGCTTAAGGTTTCTAGCTGTTGTAAGCATTATACTGCTTATGATGTTGATAATTGGAAAGGCGTTGATCGGTTCCATTTTGATGCTAAGGTGACAAAGCAAGACTTGGAGGATACTTATCAGCCTCCATTTAAGAGCTGTGTGTTGGAGGGACATGTTAGCAGTGTCATGTGCTCCTATAATAGGGTGAATGGAATTCCTACATGTGCCGATCCAGACCTTCTCCAAGGAGTAATCAGAGGCCAGTGGGGTCTAGATGGATATATTGTTTCAGACTGTGATTCAGTGGAAGTTTATTACAACTCAATTCATTACACAAAAACTCCTGAAGATGCAGTGGCTCTTGCACTGAAAGCAGGTTTAAACATGAACTGCGGTGACTTTCTTAAAAAATACACTGCAAATGCTGTAAACTTGAAGAAAGTAGACGTATCTATTGTAGACCAAGCCTTGGTGTACAACTATATAGTCCTAATGAGACTTGGCTTCTTTGAAAACCCAAAGTCACTTCCATTTGCAAACCTTGGTCCATCTGATGTATGCACTAAAGAAAATCAGCAATTGGCTCTAGAAGCTGCGAAGCAAGGAATAGTTTTGCTTGAAAACAACAAAGGAGCTCTTCCTTTATCAAAAACTAAGATAAAAAATTTGGCTGTGATTGGACCGAATGCAAATGCCACCACAGTTATGATTAGTAACTATGCCGGCATACCATGCCGCTATTCAAGCCCTTTACAAGGACTGCAGAAGTACATTTCTTCTGTAACTTACGCGCGTGGTTGCAGTGATGTTAAATGCAGTAATCAGAACCTTTTTGCAGCAGCAGTTAAGGCTGCAGCCTCTGCTGATGCAGTGGTGTTGGTTGTTGGATTGGACCAATCTATAGAAGCAGAAGGGCTGGATAGAGTTAACTTGACATTGCCTGGATTTCAAGAGAAGCTGGTGAAAGACGTGGCTGCTGCTACTAAAGGAACATTGATTTTAGTCATAATGGCAGCAGGCCCAATTGACATTTCTTTCACTAAAAGTGTAAGCAACATAGGAGGGATATTATGGGTAGGTTATCCTGGTCAAGATGGAGGAAATGCCATAGCACAAGTAATATTTGGAGACTATAACCCAGGTGGTAGGTCCCCGTTTACATGGTATCCACAATCATATGTCGATCAAGTTCCAATGACAGACATGAACATGAGAGCCAATAGCAGTAGAAATTTCCCTGGAAGAACATACAGGTTTTACAATGGGAAATCCCTCTATGAATTTGGCTATGGATTAAGCTACTCCACATTCTCCACCCACATAGCATCTGCTCCTTCCACCATAATGCTCCAGAAAAACACATCCATTTCAAAACCACTTAATAATATCTTCCTTGATGATCAAGTAATTGATATCTCCACCATAAGTTGTTTCAATTTGACATTTTCGCTTGTGATTGGTGTGAAGAACAATGGACCTTTTGATGGATCTCATGTGGTGTTAGTGTTTTTGGAGCCACCAAGTTCAGAGGCAGTGAGTGGTGTTCCATTGAAACAATTGATAGGATTTGAAAGAGCACAAGTTAAGGTTGGGAAGACAGAGTTTGTGACAGTAAAAATTGATATATGCAAAATGCTAAGTAATGTTGATAGTGATGGTAAAAGAAAGTTGGTGATTGGACAGCACAATATTCTGGTGGGAACTTCTAGTGAAAAACAAGTTACACACCACATTGATATTACAAATGGAGAAGAATTTATGTCTGAGTGA 2346 0.4062 MKNHLLFLCIFFSFFILPITSQKHACDKGSPKTSNFPFCNTSLSYETRAKDLVSRLTLQEKAQQLVNPSTGISRLGVPAYEWWSEALHGVSNVGPGTRFDSRVPGATSFPAVILSAASFNETLWYTMGQVVSNEARAMYNVDLAGLTFWSPNVNVFRDPRWGRGQETPGEDPLVVSRYAVNYVRGLQEVGDEASAKGDRLKVSSCCKHYTAYDVDNWKGVDRFHFDAKVTKQDLEDTYQPPFKSCVLEGHVSSVMCSYNRVNGIPTCADPDLLQGVIRGQWGLDGYIVSDCDSVEVYYNSIHYTKTPEDAVALALKAGLNMNCGDFLKKYTANAVNLKKVDVSIVDQALVYNYIVLMRLGFFENPKSLPFANLGPSDVCTKENQQLALEAAKQGIVLLENNKGALPLSKTKIKNLAVIGPNANATTVMISNYAGIPCRYSSPLQGLQKYISSVTYARGCSDVKCSNQNLFAAAVKAAASADAVVLVVGLDQSIEAEGLDRVNLTLPGFQEKLVKDVAAATKGTLILVIMAAGPIDISFTKSVSNIGGILWVGYPGQDGGNAIAQVIFGDYNPGGRSPFTWYPQSYVDQVPMTDMNMRANSSRNFPGRTYRFYNGKSLYEFGYGLSYSTFSTHIASAPSTIMLQKNTSISKPLNNIFLDDQVIDISTISCFNLTFSLVIGVKNNGPFDGSHVVLVFLEPPSSEAVSGVPLKQLIGFERAQVKVGKTEFVTVKIDICKMLSNVDSDGKRKLVIGQHNILVGTSSEKQVTHHIDITNGEEFMSE* 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4021 781 SMART Fn3_like_2 690 762 IPR026891 -
Mtr1g4021 781 PANTHER BETA-D-XYLOSIDASE 5-RELATED 7 770 - -
Mtr1g4021 781 Pfam Glycosyl hydrolase family 3 C-terminal domain 395 626 IPR002772 GO:0004553|GO:0005975
Mtr1g4021 781 Gene3D - 48 369 IPR036962 GO:0004553|GO:0005975
Mtr1g4021 781 Gene3D Immunoglobulins 658 775 IPR013783 -
Mtr1g4021 781 Coils Coil 381 401 - -
Mtr1g4021 781 Pfam Glycosyl hydrolase family 3 N terminal domain 101 323 IPR001764 GO:0004553|GO:0005975
Mtr1g4021 781 PANTHER SUGAR HYDROLASE-RELATED 7 770 IPR044993 GO:0009044|GO:0045493
Mtr1g4021 781 PRINTS Glycosyl hydrolase family 3 signature 109 128 IPR001764 GO:0004553|GO:0005975
Mtr1g4021 781 PRINTS Glycosyl hydrolase family 3 signature 202 218 IPR001764 GO:0004553|GO:0005975
Mtr1g4021 781 PRINTS Glycosyl hydrolase family 3 signature 276 294 IPR001764 GO:0004553|GO:0005975
Mtr1g4021 781 Gene3D - 380 628 IPR036881 GO:0004553|GO:0005975
Mtr1g4021 781 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 395 629 IPR036881 GO:0004553|GO:0005975
Mtr1g4021 781 Pfam Fibronectin type III-like domain 690 762 IPR026891 -
Mtr1g4021 781 SUPERFAMILY (Trans)glycosidases 36 394 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4021 Mtr-Chr1 51817112 51821051 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4021 21 772 Glycoside Hydrolase AT3G19620 70.712 0.0 1113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4021 K15920 - gmx:100817869 1330.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4021 1 51817112 51821051 Mtr1g4021 1 51817112 51821051 ECH