Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4017 ATGTTTTCGTGTACTTGTGTTCCTGTAGTTAATAGACTCTTCGAACCTAAGAGGGCACAATATGGGGGAGGCATTACAGTAAATCCAGGATTTGATCACAACATAAATGGCTGGAAAGTGTTTGGAAATGGAACAATCGAGGAACGAGTATCAAACAACGGAAATAGATTCATTGTTGCCAGCAACAGAACACAACCATTGGATAGTTTTTCACAGAAGGTCCAACTGAAGAAAGGAATGATATATACTTTTTCTGCTTGGTTTCAGTTGAGTGAAGGAAGTGAGTTTGTATCAGTTGTATTTAAAATAAATGGAAGTGAATTTGTACGAGGTGGTCATGTGATAGCAAAGCATGGATGCTGGTCTCTTCTAAAAGGTGGCATAGTTGCCAACTTTTCAAGCCCTGCTGAGATTCTTTTTGAGTGCGAGAATCCAACTGTGGAACTATGGGCTGATAGTGTCTCCTTACAACCATTCACCAAGAAACAATGGAGATCACAGCAAGACGATAGCGTTGAGAGGGTACGCAAGAGCAAGGTGAGATTCCATGTAACTCATCTAAACAAAACAGAAATGGAAGGAGCATCAATTGTCATCAAACAAACAAAGGCAAATTTCCCACTTGGATGTGGGATGAACCATTACATCCTTACAAACTTTGAGTACCAGAGATGGTTTGTGTCAAGATTCAAGTACACAGCTTTTACTAATGAGATGAAGTGGTATAGTACAGAGAGATTTCAAGGCCAGGAAAACTATACTATCCCAGATGCCATGATGAAATTCGCCAAAGAAAATGGCATTTCTGTCAGAGGTCATACCGTTTTCTGGGACGATGAAACTTTTCAGCCTAAATGGGTTAAGTTCCTATCTCCTGAAGAATTACGAAAAGCGGCTGCAAAAAGAATAAGATCTGTGGTTTCAAGGTATAGAGGACAACTGATTGCATGGGACGTTGTGAATGAGAATGTCCACTACCACTTTTTTGAGAACAAACTCGGCGAAAATGCCTCGCCAATATATTATTCAACAGCTTACCATCTTGATCCAGAAATCAAAATGTTCATGAATGAGTTTAACACCATTGAATCAAGTGGAGATCGGGTAGTCAGCCCACCTAATTATATCAGGAAACTTAAGGAGATTCAGCGATTTCCAGGAACTGCTGGAATATCATTGGCCATTGGGGTGCAAGGCCATTTTAGACTTGGTCGACCAAACTATGCTTACATGAGGTCAAGTCTAGATCTTCTTGGTGCAACTGGACTTCCTATATGGCTCACAGAAACAAGTGTCAATCCTCAACCAAATCAGGCAGAGTATCTTGAAGACGTGCTAAGAGAGGCTTACTCTCATCCAGCTGTTCAAGGGATTATAATTTTTGCTGGTCCGGAACAAGTTGGTTTCGGCGATACATTACTCGCAGATGCAAATTTTCGAAATACTCCAACTGGAGACATTGTGGACAAGCTGATTCGTGAGTGGGGAACTGGAACTCATACAGCCATAGCAGACAGTAGAGGGATTATAGATATTTCACTTCATCATGGAGATTATGATGTAACTGTTACACATCCTCTAACCAAACACTCCAAAAAATTGAATATAAGTGTAAAGAAAGGATCTTCACCGGAAACTATCCATGTGAAAATGCATGCCTAA 1662 0.4049 MFSCTCVPVVNRLFEPKRAQYGGGITVNPGFDHNINGWKVFGNGTIEERVSNNGNRFIVASNRTQPLDSFSQKVQLKKGMIYTFSAWFQLSEGSEFVSVVFKINGSEFVRGGHVIAKHGCWSLLKGGIVANFSSPAEILFECENPTVELWADSVSLQPFTKKQWRSQQDDSVERVRKSKVRFHVTHLNKTEMEGASIVIKQTKANFPLGCGMNHYILTNFEYQRWFVSRFKYTAFTNEMKWYSTERFQGQENYTIPDAMMKFAKENGISVRGHTVFWDDETFQPKWVKFLSPEELRKAAAKRIRSVVSRYRGQLIAWDVVNENVHYHFFENKLGENASPIYYSTAYHLDPEIKMFMNEFNTIESSGDRVVSPPNYIRKLKEIQRFPGTAGISLAIGVQGHFRLGRPNYAYMRSSLDLLGATGLPIWLTETSVNPQPNQAEYLEDVLREAYSHPAVQGIIIFAGPEQVGFGDTLLADANFRNTPTGDIVDKLIREWGTGTHTAIADSRGIIDISLHHGDYDVTVTHPLTKHSKKLNISVKKGSSPETIHVKMHA* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4017 553 PANTHER GLYCOSYL HYDROLASE 13 550 IPR044846 GO:0004553|GO:0005975
Mtr1g4017 553 SUPERFAMILY (Trans)glycosidases 193 498 IPR017853 -
Mtr1g4017 553 PANTHER HYDROLYZING O-GLYCOSYL COMPOUNDS, PUTATIVE-RELATED 13 550 - -
Mtr1g4017 553 Gene3D Glycosidases 195 498 - -
Mtr1g4017 553 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 193 491 IPR001000 GO:0004553|GO:0005975
Mtr1g4017 553 SUPERFAMILY Galactose-binding domain-like 22 158 IPR008979 -
Mtr1g4017 553 Gene3D - 14 159 - -
Mtr1g4017 553 SMART glyco_10 239 491 IPR001000 GO:0004553|GO:0005975
Mtr1g4017 553 Pfam Carbohydrate binding domain 25 103 IPR003305 GO:0016798
Mtr1g4017 553 Pfam Glycosyl hydrolase family 10 202 449 IPR001000 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4017 Mtr-Chr1 51795223 51798670 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4017 13 538 Glycoside Hydrolase AT4G33840 49.527 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4017 - - mtr:MTR_1g106770 1109.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4017 1 51795223 51798670 Mtr1g4017 1 51795223 51798670 ECH