Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4006 ATGTTGCAAACCCTAGTAGTTCCCGCAAGGTTTCGCTTCGCAAATCGAATATCTCTCCGTCGAAGCTTGAGCAGAATTCGTTCATTCAATTCCGATTATGGAGATCAGTCTCGTGGTGGGCTCCCTCGATTCTACTCTGAAATTCTTCCTCCTTCAAAGGGTAATGTTATTCGTGTTAAAGGCGATGAATTCTGGCACATGACTAAAGTATTGAGGCTCTCCACCAATGCTAGGGTACAACTCTTCAATGGAAAAGGAGGTTTGGTAGAAGGATGCATACAGAACATTGACCGCACTGGACTTGATTTTATTGCATTGACTGATCTGAAGTTAGTGCCTCCACAAAATTTTCAATTGCATGTATTTTCTGGTTTTGGTACTCTGAAGGGTGGGCGCGCTGACTGGCTTGTAGAGAAGTGTACAGAACTTGGAGCCAGTAGTGTTACTCCGCTATTGACTGAACGTTCTCCGTCAATCTCAGAAAATCGGGTGGACAGACTGGAACGTGTCATTTTAGCGGCATCTAAACAATGTCAAAGACTGCATGAAATGATCCTGAAACCTCCTGTAGAGATTGGTGATATTTTGCATCTTATTGCGCAATCAAAGCTATCTCTTGTTGCAACAGCAGAAGCAACTCCTGTTCTTAATGCATTGACGTCACCAGAAAAGGAAACTAGTGGCTTAATCGTAGTCGGGCCAGAGGGCGATTTCACTGAGAAAGAAGTGAATATGATGATGGAAGCAGGTGCTAAAGCTGTTAGTCTTGGACCTCATCGTCTTCGGGTTGAAACTGCCACGATAGCACTTCTGACTACTGTTATGTTATGGTTGGACCATTGA 843 0.4389 MLQTLVVPARFRFANRISLRRSLSRIRSFNSDYGDQSRGGLPRFYSEILPPSKGNVIRVKGDEFWHMTKVLRLSTNARVQLFNGKGGLVEGCIQNIDRTGLDFIALTDLKLVPPQNFQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSPSISENRVDRLERVILAASKQCQRLHEMILKPPVEIGDILHLIAQSKLSLVATAEATPVLNALTSPEKETSGLIVVGPEGDFTEKEVNMMMEAGAKAVSLGPHRLRVETATIALLTTVMLWLDH* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4006 280 Pfam RNA methyltransferase domain 118 274 IPR046886 -
Mtr1g4006 280 CDD RsmE-like 119 272 IPR046886 -
Mtr1g4006 280 SUPERFAMILY PUA domain-like 45 101 IPR015947 -
Mtr1g4006 280 SUPERFAMILY alpha/beta knot 118 279 IPR029028 -
Mtr1g4006 280 Pfam RNA methyltransferase PUA domain 60 103 IPR046887 -
Mtr1g4006 280 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E 41 279 IPR006700 GO:0006364|GO:0008168
Mtr1g4006 280 Gene3D - 40 280 IPR029026 -
Mtr1g4006 280 PIRSF MTase_slr0722 41 280 IPR006700 GO:0006364|GO:0008168
Mtr1g4006 280 TIGRFAM TIGR00046: RNA methyltransferase, RsmE family 55 276 IPR006700 GO:0006364|GO:0008168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4006 K09761 - gmx:100777253 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4006 1 51687122 51691561 Mtr1g4006 1 51687122 51691561 ECH