Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4002 ATGAAGCTTAGACTTAGATCATTAGAATCGAAAGAAACCCTAAAAATTGAAGTTCCTGATTCATGTTCCTCTCAACAACTCAAATTCACAATTTCTCAAACCATTCCTTCATCTTCTTCCTCTTCTATTCATCTCTCCCTCAACCGAAAGGACGAAATCAACGTCGCCTCCCCGAGCGATTCACTCCACTCAATCGGCATCGCCTCCGGCGACCTCATCTTCTACACTTTCAACCCTAACGCTTTCTCCCACAACGAAACCCTCCCTCATAAACCCAACAACCAACCCATCATTCAAAACTCGCCGGAAATCACCCCAATTGACGAAAAGTCTCCGACTTTGAACACCCCAGAAGTGAATGACACAGAGATGGTTGATGGGTCTGATGAGGCGGCGACGGCGATGACGATGGCTGTAAAGAATAATCCAGAACCTGATTTCGTGAAGAGGGTTATTAAGGAAGCGCTTGGTGATGATGTTAGTGATTTGAAGCTGTTGGTGTTTGCGGTTCATGCTGTTATTCTTGAATCTGGGTTTGTTCGTGTGGACGAGGTTTCGGGTATGGCGATTAGTTGCTCTAATCTTGTTGATGATATGTCTTCTTCTTCATCAATGATATCTTTGAGGTATACTCTTCCTGAGATTCTTACCAATGGTTCATCTCATGCTGTGATATTGAAAATTCAGACTTTAGGGAATTTTGTGAATGTCTATGGTTCATTGTGTGATGATGCTGGGTCAAGGGTGCATAGGGTTTATTTAGATAAATCTAGATTTGCTAAGCCTTTAGAATTGATGCTGGAAAATTCTGAATTTAATGGTAATTTTAACGATGTTGGAGATAAAGTTTTTGAATTGTGGAAGATAGTGAAAGATGGGCTTGCATTGCCACTATTAATTGATCTTTGTGATAAAGCTGGATTAGAACTTCCACCGTGTTTTATGCGTCTTCCGATGGAGCTTAAGCTGCTGATATTTGAGTATCTTCCCGGTGATGATTTGGCCAAAGTTTGTTGCACGTGTTCTGAATTGCAGTACCTTGCCTCGAATGATGACTTGTGGAAGAAGAAGTTCGAGGAGGAGTTTGGACAAAGGGTGAATGGTATGAAGTTTTTTAAGAACTTGTTTGCTCAGTATCGGGCAACAAAGAAGAAATTAGAGCAACCAATTCTTTTCCAAAATCCTCGTCGGTCTGGTATAATGAGGTTCTTTCAAAGGAGAAGATTTCCTAATCGTTTTGGAATGCCTCCAATTTGGGGTGGAGAGTATGATCTGCAGCCAAATTTCGGTGTAAATCTCCCTGCATATGCACGAAGGCGTACTTTCATTCCCCCGTGTCATCTAGGAGAATTTCAATGA 1359 0.4165 MKLRLRSLESKETLKIEVPDSCSSQQLKFTISQTIPSSSSSSIHLSLNRKDEINVASPSDSLHSIGIASGDLIFYTFNPNAFSHNETLPHKPNNQPIIQNSPEITPIDEKSPTLNTPEVNDTEMVDGSDEAATAMTMAVKNNPEPDFVKRVIKEALGDDVSDLKLLVFAVHAVILESGFVRVDEVSGMAISCSNLVDDMSSSSSMISLRYTLPEILTNGSSHAVILKIQTLGNFVNVYGSLCDDAGSRVHRVYLDKSRFAKPLELMLENSEFNGNFNDVGDKVFELWKIVKDGLALPLLIDLCDKAGLELPPCFMRLPMELKLLIFEYLPGDDLAKVCCTCSELQYLASNDDLWKKKFEEEFGQRVNGMKFFKNLFAQYRATKKKLEQPILFQNPRRSGIMRFFQRRRFPNRFGMPPIWGGEYDLQPNFGVNLPAYARRRTFIPPCHLGEFQ* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4002 452 PANTHER F-BOX PROTEIN SKIP22 1 451 - -
Mtr1g4002 452 SMART fbox_2 317 357 IPR001810 GO:0005515
Mtr1g4002 452 Gene3D - 315 389 - -
Mtr1g4002 452 SUPERFAMILY F-box domain 311 369 IPR036047 GO:0005515
Mtr1g4002 452 ProSiteProfiles F-box domain profile. 311 357 IPR001810 GO:0005515
Mtr1g4002 452 Pfam F-box-like 316 356 IPR001810 GO:0005515
Mtr1g4002 452 Gene3D - 144 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4002 Mtr-Chr1 51640471 51642385 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4002 K10293 - gmx:100796338 482.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4002 1 51640471 51642385 Mtr1g4002 1 51640471 51642385 ECH