Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3798 ATGGATTCCTCCTCCGATATCAAAAACGTGCAAGCCTCACCCGTTCCCGAAGATCCCGAGAAGAAGAAGAAAAAACTTGAAAAGGAAAAAGAAAGGGAAAGAGAGAAGGCTGAGAAGTTAGCCAAGTTTAATAAGAAGAAAGAAGCTCAGCAACTAGCGCAACAAGCAGCATCCAATGCTTCTAAGAAGAGCGAAAAGAAAACTGCCAAACGCGGTGCAGTGGTTGAGAATCCTGAGGATTATATTGATCCCGAGACTCCGTTTGGTGATAAGAAACAAATGTCTAGGCAATTGGCACAGAAGTATAATCCAACCGCTGTCGAGAAATCGTGGTATGAGTGGTGGGAGAAATCAAAGTATTTTGTGGCAGATGCTAGCAGCAAGAAACCACCTTTTGTGATTGTTTTGCCTCCACCAAATGTGACTGGTGCCCTCCATATAGGCCATGCTCTGACAGCTGCGATTGAGGATACGATGATTCGTTGGCGTCGAATGTCTGGATACAATACTTTGTGGGTGCCCGGGATGGATCATGCAGGAATTGCTACACAGGTAGTTGTGGAGAAAAAGATAATGCGTGAGAGGAAACTTACAAGACATGATCTGGGTCGTGAAAAATTTATCTCAGAGGTTTGGGAATGGAAAAACAAGTATGGGGGCACAATTTTGCAACAATTACGCCGATTAGGAGCATCTCTGGATTGGTCTCGTGAGTGCTTCACAATGGATGACAAGAGATCTAAGGGTGTAACAGAGGCTTTTGTAAGGCTTTACAAGCTAGACCGTATCTATAGAGACGTACGGTTAGTGAATTGGGATTGTGTGTTACGTACGGCAGTATCTGATATTGAGGTGGATTATATTGAGATAAAAGAAAGGACCCTACTAAAGGTTCCAGGATACGACAGACCTGTTGAATTTGGAGTTTTAAAAAAATTTGCATACCCTTTGGAAGGGAACCTAGGTGAAATTGTTGTTGCCACAACTAGGATAGAAACCATGCTTGGTGATACTGCTATTGCCGTTCATCCTACTGATGACAGATACAGCCAATTTCATGGAAAATATGCTGTTCACCCATTTAATGGCAGAAAGATTCCTATAATATGTGATGCTATTCTTGTTGATCCAAAGTTCGGGACAGGTGCTGTGAAGATTACACCGGCCCATGATCCCAATGATTTTGAGGTTGGAAAACGTCACAAACTCGAATTTATTAATGTTTTCACTGACGATGGGAAAGTAAATTCCAATGGTGGCTCGGAGTTTTTGGACATGCCTCGATTTAAGGCCCGGGAAGCAATAACAGAAGCATTACAAAAGAAGGGTCTTTATAGAGGTTCTGAAAACAATGAGATGCGCCTTGGCGTATGTTCAAGAAGCAACGATGTTATAGAGCCCATGATAAAGCCACAATGGTATGTCAATTGCGGTGATATTGCAAAGGAGGCTCTTCATGCTGTCACGGATGAGGAAAACAGAAGGGTAGAGATCATTCCGAAACAATATGTGGCTGATTGGAAGAGATGGCTGGAAAACATACGTGATTGGTGCATTTCACGACAGCTATGGTGGGGTCACCAAATTCCTGCATGGTATGTTACTTTAGAGGATGATATACTGCAGGAATTAGGTGCGTACAACGACCATTGGGTAGTGGCGAAAAACGAAGAAGAGGCCAGAGATGAAGCTAACCAAAGGTATAATGGAAAGAAGTTTCATTTAATCCGGGACCCTGACGTTCTGGATACATGGTTTTCTTCTGGTCTGTTCCCTTTGACTGTACTGGGATGGCCGGATGACACAGACGACCTGAGGGCATTTTATCCAACTTCTGTTTTGGAAACCGGCCATGATATCCTCTTTTTCTGGGTTGCTCGTATGGTTATGTTAGGAATGAAGTTGGGAGGCGATGTGCCTTTTAGCAAGATTTATTTGCACCCCATGATTCGTGATGCACATGGACGCAAGATGTCTAAGTCTTTGGGGAATGTTATTGATCCTATTGAGGTGATAAATGGGATAACACTAGAAGGTTTACATACAAGGTTAGAAGGTGGTAACCTTGACCCCAAAGAACTAGCTGTTGCCATAGAGGGTCAGAAGAAGGACTTTCCAAATGGTATTGAGGAATGTGGCGCTGATGCCCTCCGTTTTGCGCTAGTCTCATACACAGCTCAGTCTGACAAAATTAACCTAGATATTCAAAGGGTGGTTGGGTATCGCCAATGGTGCAATAAATTATGGAATGCGGTGCGATTTGCTATGAGCAAGCTGGGAGATGATTATATCCCTCCTGCAAATTTGACTCTAGATAATCTCCCATTTAGCTGCCAGTGGATACTATCTGTGTTGAATAAAACCATATCGAAAATAACCAAGTCTCTAGAATTGAATGAGTTCTCGCAAGCTACCACTGCTGTGTATTCTTGGTGGCAGTATCAATTGTGTGATGTGTTTATTGAAGTGATCAAGCCTTACTTTTCTGGCAATGATCCCAAGTTTGCTTCCGAAAGACGGTTTGCTCAAGACACTTTGTGGTTTTGTCTAGACAATGGTCTGCGATTGCTTCATCCTTTTATGCCTTTTGTCACGGAAGAATTGTGGCAACGCCTTCCTTCGCCCAGGGAATCTAAGAGAGCAGAATCTATCATGATAGCTGATTATCCATCAGCTATAGAGAGTTGGAATAATGAAAAAGTAGAGAATGAGATGGACCTCATTGAGTCTACTGTTAAGTCTATCAGGTCACTGGCAAAAGAGAGACGTGACAGGCGACCAGCTTTTGCTCTCTGCCGAACACAGGTGGTTGAAGAGATTATTAACAGCCATCAACTGGAGATCGCAACACTAGCTAATCTATCCTCTTTGACTGTGATCACTAAAATTGAAGCTTTTCTTTCTGGATACGCTGATACTGTCGTAAATGAAAGCCTTTCTGTGTATTTAGAGCTTCAAGCAATTAATTCTGAAGATGCTAGGCTTGGAAAGATGAAGAAGATAGATGAGCTGAAAAAGCAAATAGAAAGATTAGAGAGGAGTATGAATGTTCCAGGTTATAAAGAGAACGTTTCGCAACAAATTCAATCAAAGAATGAGGAGAAGCTAAAATCCCTAAAGGACCGTTTGTTGCTTGAGGAAACGGCTGTACTGAGTATCTAG 3162 0.425 MDSSSDIKNVQASPVPEDPEKKKKKLEKEKEREREKAEKLAKFNKKKEAQQLAQQAASNASKKSEKKTAKRGAVVENPEDYIDPETPFGDKKQMSRQLAQKYNPTAVEKSWYEWWEKSKYFVADASSKKPPFVIVLPPPNVTGALHIGHALTAAIEDTMIRWRRMSGYNTLWVPGMDHAGIATQVVVEKKIMRERKLTRHDLGREKFISEVWEWKNKYGGTILQQLRRLGASLDWSRECFTMDDKRSKGVTEAFVRLYKLDRIYRDVRLVNWDCVLRTAVSDIEVDYIEIKERTLLKVPGYDRPVEFGVLKKFAYPLEGNLGEIVVATTRIETMLGDTAIAVHPTDDRYSQFHGKYAVHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFEVGKRHKLEFINVFTDDGKVNSNGGSEFLDMPRFKAREAITEALQKKGLYRGSENNEMRLGVCSRSNDVIEPMIKPQWYVNCGDIAKEALHAVTDEENRRVEIIPKQYVADWKRWLENIRDWCISRQLWWGHQIPAWYVTLEDDILQELGAYNDHWVVAKNEEEARDEANQRYNGKKFHLIRDPDVLDTWFSSGLFPLTVLGWPDDTDDLRAFYPTSVLETGHDILFFWVARMVMLGMKLGGDVPFSKIYLHPMIRDAHGRKMSKSLGNVIDPIEVINGITLEGLHTRLEGGNLDPKELAVAIEGQKKDFPNGIEECGADALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFAMSKLGDDYIPPANLTLDNLPFSCQWILSVLNKTISKITKSLELNEFSQATTAVYSWWQYQLCDVFIEVIKPYFSGNDPKFASERRFAQDTLWFCLDNGLRLLHPFMPFVTEELWQRLPSPRESKRAESIMIADYPSAIESWNNEKVENEMDLIESTVKSIRSLAKERRDRRPAFALCRTQVVEEIINSHQLEIATLANLSSLTVITKIEAFLSGYADTVVNESLSVYLELQAINSEDARLGKMKKIDELKKQIERLERSMNVPGYKENVSQQIQSKNEEKLKSLKDRLLLEETAVLSI* 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3798 1053 Coils Coil 994 1014 - -
Mtr1g3798 1053 Pfam tRNA synthetases class I (I, L, M and V) 111 734 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Mtr1g3798 1053 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 306 455 IPR009008 GO:0002161|GO:0006418
Mtr1g3798 1053 Coils Coil 898 918 - -
Mtr1g3798 1053 PANTHER VALYL-TRNA SYNTHETASES 17 1040 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Mtr1g3798 1053 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 745 994 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Mtr1g3798 1053 CDD Anticodon_Ia_Val 733 872 IPR033705 -
Mtr1g3798 1053 MobiDBLite consensus disorder prediction 15 46 - -
Mtr1g3798 1053 Pfam Anticodon-binding domain of tRNA ligase 779 921 IPR013155 GO:0004812|GO:0006418
Mtr1g3798 1053 Gene3D - 739 922 - -
Mtr1g3798 1053 Gene3D HUPs 99 297 IPR014729 -
Mtr1g3798 1053 Gene3D HUPs 492 732 IPR014729 -
Mtr1g3798 1053 CDD ValRS_core 130 733 - -
Mtr1g3798 1053 MobiDBLite consensus disorder prediction 1 92 - -
Mtr1g3798 1053 PRINTS Valyl-tRNA synthetase signature 132 143 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Mtr1g3798 1053 PRINTS Valyl-tRNA synthetase signature 343 360 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Mtr1g3798 1053 PRINTS Valyl-tRNA synthetase signature 460 473 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Mtr1g3798 1053 PRINTS Valyl-tRNA synthetase signature 578 599 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Mtr1g3798 1053 PRINTS Valyl-tRNA synthetase signature 609 627 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Mtr1g3798 1053 MobiDBLite consensus disorder prediction 48 62 - -
Mtr1g3798 1053 Hamap Valine--tRNA ligase [valS]. 98 1052 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Mtr1g3798 1053 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 139 150 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Mtr1g3798 1053 Gene3D - 306 451 IPR009008 GO:0002161|GO:0006418
Mtr1g3798 1053 Coils Coil 20 66 - -
Mtr1g3798 1053 SUPERFAMILY Nucleotidylyl transferase 98 743 - -
Mtr1g3798 1053 MobiDBLite consensus disorder prediction 63 90 - -
Mtr1g3798 1053 PANTHER BNAA08G31530D PROTEIN 17 1040 - -
Mtr1g3798 1053 TIGRFAM valS: valine--tRNA ligase 99 1037 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3798 Mtr-Chr1 49536531 49545685 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3798 K01873 - gmx:100798111 1776.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3798 1 49536531 49545685 Mtr1g3798 1 49536531 49545685 ECH