Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3770 ATGGGTAAGCAAAAGCAACAAGTACTTTCCCGTTTCTTCGCTCCAAAACCCAAAACCCCTTCATCAACCACCGACCCACCACCACCGCCACCATCTTCCTCTCCCAAAATCACCACCACCGTCAATTTCTCACCATCCAAACGCCGCTTAATCTCTCAACTCACAGCATCCCCTAACAAACAACCCAAACTCTCTTCACCTATTCCCTCTCTCCACCAACGCTTCCTCCAGAAGCTTCTAGAACCTTCTAATCCAACCCCACAACCTCCTTCATCTTCCAAACCTGTAAAATTTACTCCTTTAGAGCATCAGGTAGTGGAACTCAAAGCTAAGTACCCTGATGTTCTTTTAATGATTGAAGTTGGTTACAAGTATCGATTTTTCGGCGAAGATGCTGAGAATGCTGCAAGGGTTTTGGGTATTTATGCTCATATGGATCATAATTTTTTAACTGCTAGCATACCAACTTTTCGATTAAATGTCCATGTGAGGAGGCTTGTTAGTGCAGGGTATAAAGTTGGCGTTGTTAAGCAGACTGAAACTGCTGCTATTAAGTCCCATGGTTTGAATCGGGCCGGTCCATTTTGTCGAGGTTTGTCAGGGTTGTATACGAAGGCCACACTTGAGGCGGCGCATGATATGGGGGGAGGCGAAGATGGGGGTGGGACCGTGAATAATTATTTGCTGTGTGTTGTGGAAAAGAGTATTTTGGGAGAGAAAAAATTTAATTGTGGTGTGGAAGGTGGTTTTGATGTGAGGATTGGGATTGTTGGTGTGGAGATATCGACGGGAGATGTTGTTTATGGAGAGTTTGATGATAATTTTTTGAGGAGTGAACTTGAGGCTGTTGTTGTTAGCTTGTCTCCTGCTGAGTTGCTTCTTGGAGACCCTCTTTCAAAACAAACTGAGAAGTTATTACTGGCTTTTGCTGGACCCTCCTCAAATGCTCGTGTGGAGCGTGCCTCACGAGATTGCTTCACCAACGGAGGCGCTTTTGCTGAAGTTATGACATTGTATGAGAACACGCATGCTGACAGTCCAGATTCAATGCAAAACAATGAATTGGCTGAGCTTGGAAGTCAGCAGATGGTAGTGAAGGAGGTGATGAACCTGCCTGAGTTGGCTGTCGAAGCTTTGGCCTTAACTATTCGCCATTTGAAGGGATTCGGTTTTGAAAGAATTCTGTGCTCAGGTGCTTTAAGGCCCTTCGTAAGCAATACAGAAATGACTCTCTCAGCTAATACACTTCAACAACTGGAGGTTTTACAAAATAACAGTGATGGATCTGCGAGTGGTTCCTTGCTGCAAGTTATGAATCACACTCTTACTATATTCGGTTCCAGGCTTCTTAAGCATTGGGTATCACACCCATTGTGTGATCAAACCTTGATTGCTGCTCGTCTTAATGCTGTATCTGAAATCGCAGAGTCCATGGGAACCTGTAATGGTATGAAGAATCTTGGACGCTTTGAGGAAGATTCTGATGTAGCAATTGTGCAGCCTGAGTTAGCACACATACTTTCATTGGTTTTGACATCCCTGGGCCGGGCACCTGATATACAGCGTGGGATTACAAGAATTTTCCATCGCACTGCTACCCCATCTGAGTTTATTGCCATTATTCAAGCTATTTTATCTGCTGGAAAACGGCTTCAGCAACTTAACATAGGAGAGGGTGATAATAATAACAATAATAAATTGCGCTCTGATTTGTTAAAGAAGTTAATTTCAACTGCGTCCTCTACAAGTGTTATTGGTAATGCTGCAAAAATGCTGTCATCTTTAAATGAAGACTCTGCTTACCAAGGAGATTGGACTAATATGATCATTGCAACTGAGGAGCAATTTCCAGAGGTAATTACAGCTCGAAAGGCTTTTCAGATGGCAGTGGAACACTTAGATTCATTGATTGACTTGTACCGCAAACGGCTCGGAATGCGGAAATTGGAATATATGTCTGTTTCTGGTGTAACCCACTTGATAGAGTTATCAACTGATGTAAAAGTGCCTTTAAATTGGGTTAAAGTAAATAGCACAAAGAAAACAATTCGGTATCACCCTCCTGAAGTAGTGACAGCATTGGATGAGTTATCATTAGCGAAAGAGAAGCTTACTGTTGCCTGCCGAGCTGCATGGGATAGCTTTCTGAGGGACTTCAGTAAACACTATGCTGAGTTCCAAGCTTCTGTTCAAGCACTAGCTTCTCTAGATTGCCTGCACTCACTTGCCATTCTTTCAAGAAATAAGGGTTATGTCCGCCCTGTTTTTGTAGATGATCATGAGCCTGTTCAGATGCAAATTTGTTCTGGTAGACATCCAGTTTTGGAGTCTATCTTACAAAATAATTTTGTCCCAAATGATACAAGCATGCACGCCGATAGAGAGTACTGTCAGATTGTCACTGGACCCAATATGGGGGGAAAAAGTTGCTATGTTCGCCAAGCATCTCTGATCGCTCTCATGGCTCAGGTTGGTTCCTTTGTACCAGCATCATCAGCAAAACTGCATGTACTGGACGGAATTTACACCCGGATGGGCGCTTCTGACAGTATTCAGCAAGGGAGAAGCACCTTCCTAGAAGAATTGAGCGAGACTTCACACATACTTCATAGATGTACAGGACGTTCGCTGGTTATACTTGATGAGCTTGGGAGAGGTACAAGTACGCATGATGGCATGGCAATTGCTTATGCGACATTACATTATCTTCTGAAGCAGAAGAAAAGTTTGGTCCTATTTGTCACTCATTATCCAAAGATTGCAAGCCTGGAAACTGAATTTCCAGGCTCTGTAGCAGCATATCACATGTCACATCTGACCTCACACGATGATGTGAGTAAAAACTCCAACGATCATGAAGACATCACTTATTTATATAAACTCGTACCTGGTGTTTCTGAGAGAAGTTTTGGTTTTAAGGTTGCCCAGCTTGCACAGTTACCGTCGCATTGCATTAGCCGAGCTATTGTCATGGCTTCCAAATTAGAAGCACTAGTAAACAGCAGAATACATGGTAGATCAGGAAAAGAGTTGTTGGATGAACCTGTTATCCATCAAGAGCAAGAATTACACCACTGTCCTCATCAAGAATTTGGTAGAGCATATAAAGAATTCTATTCAAACTTAAAAGCTACAATATTAGATGATGATGACCATGCAAAAAGCTTTCAACTTTTAGAGAATGCAAGAAGCATTGCAAAGACATTAGTTAGCAGGTCAATTCGGTTTGTATAA 3234 0.4258 MGKQKQQVLSRFFAPKPKTPSSTTDPPPPPPSSSPKITTTVNFSPSKRRLISQLTASPNKQPKLSSPIPSLHQRFLQKLLEPSNPTPQPPSSSKPVKFTPLEHQVVELKAKYPDVLLMIEVGYKYRFFGEDAENAARVLGIYAHMDHNFLTASIPTFRLNVHVRRLVSAGYKVGVVKQTETAAIKSHGLNRAGPFCRGLSGLYTKATLEAAHDMGGGEDGGGTVNNYLLCVVEKSILGEKKFNCGVEGGFDVRIGIVGVEISTGDVVYGEFDDNFLRSELEAVVVSLSPAELLLGDPLSKQTEKLLLAFAGPSSNARVERASRDCFTNGGAFAEVMTLYENTHADSPDSMQNNELAELGSQQMVVKEVMNLPELAVEALALTIRHLKGFGFERILCSGALRPFVSNTEMTLSANTLQQLEVLQNNSDGSASGSLLQVMNHTLTIFGSRLLKHWVSHPLCDQTLIAARLNAVSEIAESMGTCNGMKNLGRFEEDSDVAIVQPELAHILSLVLTSLGRAPDIQRGITRIFHRTATPSEFIAIIQAILSAGKRLQQLNIGEGDNNNNNKLRSDLLKKLISTASSTSVIGNAAKMLSSLNEDSAYQGDWTNMIIATEEQFPEVITARKAFQMAVEHLDSLIDLYRKRLGMRKLEYMSVSGVTHLIELSTDVKVPLNWVKVNSTKKTIRYHPPEVVTALDELSLAKEKLTVACRAAWDSFLRDFSKHYAEFQASVQALASLDCLHSLAILSRNKGYVRPVFVDDHEPVQMQICSGRHPVLESILQNNFVPNDTSMHADREYCQIVTGPNMGGKSCYVRQASLIALMAQVGSFVPASSAKLHVLDGIYTRMGASDSIQQGRSTFLEELSETSHILHRCTGRSLVILDELGRGTSTHDGMAIAYATLHYLLKQKKSLVLFVTHYPKIASLETEFPGSVAAYHMSHLTSHDDVSKNSNDHEDITYLYKLVPGVSERSFGFKVAQLAQLPSHCISRAIVMASKLEALVNSRIHGRSGKELLDEPVIHQEQELHHCPHQEFGRAYKEFYSNLKATILDDDDHAKSFQLLENARSIAKTLVSRSIRFV* 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3770 1077 Pfam MutS domain II 226 387 IPR007860 GO:0005524|GO:0006298|GO:0030983
Mtr1g3770 1077 Gene3D - 751 1026 IPR027417 -
Mtr1g3770 1077 Pfam MutS domain III 414 743 IPR007696 GO:0005524|GO:0006298|GO:0030983
Mtr1g3770 1077 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 79 1068 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Mtr1g3770 1077 Pfam MutS domain I 99 209 IPR007695 GO:0005524|GO:0006298|GO:0030983
Mtr1g3770 1077 Gene3D MutS, connector domain 222 408 IPR036678 GO:0005524|GO:0006298|GO:0030983
Mtr1g3770 1077 SMART DNAend 429 778 IPR007696 GO:0005524|GO:0006298|GO:0030983
Mtr1g3770 1077 PIRSF Msh6 88 1049 IPR017261 GO:0006298|GO:0030983
Mtr1g3770 1077 Gene3D - 593 719 - -
Mtr1g3770 1077 SUPERFAMILY DNA repair protein MutS, domain II 224 424 IPR036678 GO:0005524|GO:0006298|GO:0030983
Mtr1g3770 1077 SMART mutATP5 795 993 IPR000432 GO:0005524|GO:0006298|GO:0030983
Mtr1g3770 1077 Gene3D - 411 743 - -
Mtr1g3770 1077 MobiDBLite consensus disorder prediction 20 35 - -
Mtr1g3770 1077 SUPERFAMILY DNA repair protein MutS, domain I 93 207 IPR016151 GO:0005524|GO:0006298|GO:0030983
Mtr1g3770 1077 Pfam MutS domain V 798 996 IPR000432 GO:0005524|GO:0006298|GO:0030983
Mtr1g3770 1077 Gene3D DNA repair protein MutS, domain I 90 215 IPR016151 GO:0005524|GO:0006298|GO:0030983
Mtr1g3770 1077 SUPERFAMILY DNA repair protein MutS, domain III 413 748 IPR036187 -
Mtr1g3770 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 751 996 IPR027417 -
Mtr1g3770 1077 MobiDBLite consensus disorder prediction 1 44 - -
Mtr1g3770 1077 PANTHER DNA MISMATCH REPAIR PROTEIN MSH3 79 1068 - -
Mtr1g3770 1077 ProSitePatterns DNA mismatch repair proteins mutS family signature. 876 892 IPR000432 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3770 Mtr-Chr1 49269093 49278828 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3770 K08736 - gmx:100789883 1575.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3770 1 49269093 49278828 Mtr1g3770 1 49269093 49278828 ECH