Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3758 ATGAATTCAATAGCCCTTTTAGGTTTAAGGAAAAGGGTCGTCCACAAATTTTTTCATTGTTTTGTTATTTCACGGAGATTGTGTAAGGATACGTTTGCTGGTAGTAATAATAATGGGTTTGAATGTATTGAGGAGCCTTTGAAGAAAATAGTTTCTGATTTTGATTCTAATTTGGACAAAGGGTTTCATTTGAATGAGGATTCGAATTTTGATCAAAATCCATTTTCGCTTAGACAAGGGTTCATTGAAAGTGTGAAGTTAGATGCTAAGAGGGCTCTTGAGGTTCTTAGACAAGATGGTCCTGGTTTAGATGCTAGGTTGGTTTTAGAGGAGTTGGGTATAAGACCTTCGGGTATTCTTGTTAGAGAGGTTCTCTTTGGAATTTTGAAGAATATAAATAGTGAGAATAAGACCAGGTGTGCAAAGCTGGCTTATAAGTTTTTTGTGTGGTGTGGTCAGCAGGAGGATTATCGGCACACAGCGAATGCCTATCACTTGATTATGAACATATATGCTGAGTGCAAAGAGTTTAAGGCGTTGTGGAGGTTGGTCGATGAGATGATTGGGAAAGGTTATAAGGCTACTGCTCGTACTTTCAATATTTTGATTCGTACTTGTGGCGAGGCGGGCTTGGCTAAGACATTGGTGGAGAGGTTCATAAAATCGAAGTCCTTTAACTATAGGCCTTTTAAGCATTCCTATAACGCAATTCTACACAGTTTTCTCGTGCTAAATCAGTACAAATTGATTGAGTGGGTTTATGAACAGATGTTGCTTGATGGTGGTTTTTCATCAGATATTTTAACTTATAATATTGTCATTTATGCCAAGTACAGACTTGGAAAGGTGGATCAGGTCCTCACACTGCTTGGTGAGATGGATAGAAATGGATTTTCTCCAGATTTTCATACCTACAACATTCTTCTTCATGCTATCAGTAAAGGGGATATCGGTAAAGGGGATCTCGATAAAGAGGATCTCGGTAAAGAAAAGGAACAATTTAAAGCTCTTAAACTTTTGAATTACATGAGAGAAACAGGTATAGAGCCTACTGTACTTCATTTCACCACATTGATAGATGGATTCAGCAGAGCCGGGAAATTGGATGCTTGCCAATATTTTTTCAATGAAATGAAAAAGAATGGGTGCATGCCAGATGTGGTGGCTTATACTGTTATGATAACCGGATATGTAGTGGCACGTGAGCTTGAGAAAGCGCAGGAAATGTTTGAAGAAATGCTTTCCAAGGAACTAGTCCCAAATGTTTTTACATACAATTCCATGATTCGGGGATTATGCATGGCAGGGAAATTCGATGAAGCATGCTCAATGTTCAAGGAAATGGAAAGGAAAGGTTGTAGTCCAAACTCTGTTGTCTATATTACCTTAGTGAGTTGTTTGCGGAATGCTGGAAGGGTTGCTGATGCTCGTGAGGTGATAAAACAAATGACGGAGACAGGGAAGTATGCCCATTTACTTTCAAGATTCAAAGGGTATAAGATGTAG 1506 0.3878 MNSIALLGLRKRVVHKFFHCFVISRRLCKDTFAGSNNNGFECIEEPLKKIVSDFDSNLDKGFHLNEDSNFDQNPFSLRQGFIESVKLDAKRALEVLRQDGPGLDARLVLEELGIRPSGILVREVLFGILKNINSENKTRCAKLAYKFFVWCGQQEDYRHTANAYHLIMNIYAECKEFKALWRLVDEMIGKGYKATARTFNILIRTCGEAGLAKTLVERFIKSKSFNYRPFKHSYNAILHSFLVLNQYKLIEWVYEQMLLDGGFSSDILTYNIVIYAKYRLGKVDQVLTLLGEMDRNGFSPDFHTYNILLHAISKGDIGKGDLDKEDLGKEKEQFKALKLLNYMRETGIEPTVLHFTTLIDGFSRAGKLDACQYFFNEMKKNGCMPDVVAYTVMITGYVVARELEKAQEMFEEMLSKELVPNVFTYNSMIRGLCMAGKFDEACSMFKEMERKGCSPNSVVYITLVSCLRNAGRVADAREVIKQMTETGKYAHLLSRFKGYKM* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3758 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Mtr1g3758 501 Pfam PPR repeat family 266 312 IPR002885 -
Mtr1g3758 501 Pfam PPR repeat family 350 397 IPR002885 -
Mtr1g3758 501 Pfam PPR repeat family 420 467 IPR002885 -
Mtr1g3758 501 PANTHER OS10G0506000 PROTEIN 1 500 - -
Mtr1g3758 501 TIGRFAM PPR: pentatricopeptide repeat domain 458 487 IPR002885 -
Mtr1g3758 501 TIGRFAM PPR: pentatricopeptide repeat domain 423 457 IPR002885 -
Mtr1g3758 501 TIGRFAM PPR: pentatricopeptide repeat domain 269 301 IPR002885 -
Mtr1g3758 501 TIGRFAM PPR: pentatricopeptide repeat domain 355 387 IPR002885 -
Mtr1g3758 501 TIGRFAM PPR: pentatricopeptide repeat domain 388 422 IPR002885 -
Mtr1g3758 501 Gene3D Tetratricopeptide repeat domain 322 417 IPR011990 GO:0005515
Mtr1g3758 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 490 IPR002885 -
Mtr1g3758 501 Gene3D Tetratricopeptide repeat domain 418 488 IPR011990 GO:0005515
Mtr1g3758 501 Gene3D Tetratricopeptide repeat domain 249 321 IPR011990 GO:0005515
Mtr1g3758 501 Gene3D Tetratricopeptide repeat domain 117 242 IPR011990 GO:0005515
Mtr1g3758 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Mtr1g3758 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Mtr1g3758 501 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 1 500 - -
Mtr1g3758 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3758 Mtr-Chr1 49166046 49169655 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3758 270 494 Miscellaneous Gene Families AT4G11690 28.319 8.45e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3758 - - ccaj:109794849 736.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3758 1 49166046 49169655 Mtr1g3758 1 49166046 49169655 ECH