Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3749 ATGGTTTCACAGTGGGGAATCAAGTTCGCCGTTCATCTCATCACCGCCCATTTCGGCAAAATCGTCGCCAATGTTGCTGAAAAACTACTTAACAATGGACCTCTCACGTTGGAATTGGTTACTCGCTACACCGAACTTTCCAATGAGCATGTTAAGAACTCATTGCTTGTCCTAATTCAACACAATTGTGTTCAAGCATTCACTGAAGCTGGGGATGAAGACGGGTCGAGAGTTGTTAAGCCGAAGTACTTGGTGTTGTTTGATAACATAGTCCATCGACTGAGATTTCCGAAATTCATGGAGATAGTGTCGCAGGAACTTGATGATAAGTGTGTAACGATTCTCAAGGGATTGCTCCGCGATGGTAGACTTACCTTGAAACAATTGGTTGACATGGGTCAAGATAAAGAAAATGCAATGGCTCCAGATGCTGTACGAGAGAGCCTTTGTAGACTTCTTAGAGCCCGATACGTTGAACGTTGCCCAGTCCCCGAGGCTAAAATAGTTGAAGAAAAGGGAGATGATAAGAAGGGCCGTTCTACTTCTAATAAGAAGGCCAGGGTTTTCAAAGTGCCAGAGGAACATCGTGTTGTGGAAGCTGCAAAGCGTGGGGATATGATCAGATTTTCACTTACTGCATATACAGGATGTAGTAGTGATGGAGAAACAAAGCTAGCTGATATAAGTGTTGCAGAAAATGTTGCAAAAGAGGAGTCATTTCTTTGGCGTGCAAATTTTGAGGAGTTCATACGTTATCTTAGGGACAAGGCATTGATTGAGAATGTAAGAGCACGGATGGATGATGGAGCTGCTACTGTCCTAAGTGCAATTTTGGAGGCAACAAGAAATATAGATAAAAACGTGAAAATTGAACAATCAGCTCCCTGTACACTGGATACAATTTCCTCAGAGGTTATGAAGACTGAAAATGGCCGAACTATGACCATGGATCGTGTTAAAGCTGCTCTTGTTCAGTTGGGTTGTGCAAACCAGAATATTGTTGATTTTAAGCGCATTATTCATCTGGCTCGAAATGAAGAGGTTGAGTCAATTGTGTTAAAAAGGTATGGAAGAGATGCCTACCGAATGTTCAGGCATCTGTTAAAGGAAAATCAGTTTCGTCCGACAGATCAGATTGCGGAGGCTACTCTTGTTGAGAAAAAGGAAGCTCCAAAGTTACTGTTCAAGTTATGGAGGGAAAACTACTTGCAGATGGAGAAATTAACTGTCAGCATGACATCTCAGAATGGGACATCTCCAATTTTAATGTGGAAAGTTAATCAGCCTCTGCTTTGGGAACATGTTCTAGACGAGATGTACCACGGTGCCTTAAATTTGAAACTAAGAATGGCTTTTGAGGAGGAAAAGGATGAAGAGATTTTGAATATAAGTAAGAAGACACGTAATGAGTCCGCGCCACTGCAGAAGAAATACGAACGGCTACGAAATGTTTTGCTTCTCTTGAAATCATCATTGATGAAACTTGATGATGCTCTTATGCTTTTCCATGACTTCTGA 1518 0.417 MVSQWGIKFAVHLITAHFGKIVANVAEKLLNNGPLTLELVTRYTELSNEHVKNSLLVLIQHNCVQAFTEAGDEDGSRVVKPKYLVLFDNIVHRLRFPKFMEIVSQELDDKCVTILKGLLRDGRLTLKQLVDMGQDKENAMAPDAVRESLCRLLRARYVERCPVPEAKIVEEKGDDKKGRSTSNKKARVFKVPEEHRVVEAAKRGDMIRFSLTAYTGCSSDGETKLADISVAENVAKEESFLWRANFEEFIRYLRDKALIENVRARMDDGAATVLSAILEATRNIDKNVKIEQSAPCTLDTISSEVMKTENGRTMTMDRVKAALVQLGCANQNIVDFKRIIHLARNEEVESIVLKRYGRDAYRMFRHLLKENQFRPTDQIAEATLVEKKEAPKLLFKLWRENYLQMEKLTVSMTSQNGTSPILMWKVNQPLLWEHVLDEMYHGALNLKLRMAFEEEKDEEILNISKKTRNESAPLQKKYERLRNVLLLLKSSLMKLDDALMLFHDF* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3749 505 PANTHER RNA POLYMERASE III DNA DIRECTED -RELATED 3 505 IPR039748 GO:0003697|GO:0005666
Mtr1g3749 505 Pfam RNA polymerase III subunit RPC82 helix-turn-helix domain 10 68 IPR013197 -
Mtr1g3749 505 Pfam RNA polymerase III subunit RPC82 148 315 IPR008806 GO:0003677|GO:0006351
Mtr1g3749 505 Gene3D - 245 335 IPR036388 -
Mtr1g3749 505 Gene3D - 336 427 IPR036388 -
Mtr1g3749 505 Gene3D - 87 170 IPR036388 -
Mtr1g3749 505 Gene3D - 2 77 IPR036388 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3749 K03023 - gmx:100784750 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3749 1 49084877 49092497 Mtr1g3749 1 49084877 49092497 ECH