Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3726 ATGTGGCCATTCAGCAGGAAAGGGGTATCTGGGTTTTCATGGAAGTCAACTGCTGAAGAAGTTACTCATGGAATTGATGCAACTGGCCTCACTGCTATTGTCACTGGAGCATCCAGTGGTATTGGCACTGAGACTACGCGTGTTCTTGCTTTACATGGTGTCCATGTGATTATGGCTGTTAGAAATAAGGTTAATGCTAATAATACCAGAGAAGCAATACTTAAAGAGATTCCCTCAGCAAAAATTGATGTCATGGAGTTAGATCTCAGTTCATTGGAATCTGTCAAGAAATTTGCATCCGAATTTAATTCCTCTGGTCTTCCGTTGAACATATTGATAAACAATGCAGGAGTCATGGCATGCCCTTTCATGCTTTCCAATGACAACATCGAACTACAGTTTGCAACAAACCACTTAGGTCATTTTCTCTTGACAAATCTTTTGTTGGACACTATGAAGAAAACAGCTAGTGAAAGTAAGACTGAAGGAAGAATTGTTAATGTCTCCTCAGAAGCTCACAAATTTGCATATTCTGAAGGAATCCGTTTTGACAAAATTAATGAACAATCAAGTTACAGCAAATGGGGTGCATATGGACAGTCAAAGCTTGCTAATATTTTACATGCCAACCAACTTACAAAACATTTCAAGGATGATGGTGTGAATATCATTGCAAATTCTCTTCATCCAGGAGGCATTGCCACCAATCTTTACCGTCATAACAGTGCAATCAACGGTATAGTAAATGTGGTTGGCAAACTTGTGATGAAAAACGTTCCACAGGGGGCAGCCACAACCTGCTATGTAGCATTGCACCCACAAGTGAAGGGAGTTAGTGGTGAATATTTTTCAGACAATAATGTGGCCAAATCAAGTTCACATGGGAAGGATGCTGATTTGGCTAAGAAACTTTGGGATTTCAGCATGAATTTGATCAAGGACAAATAG 948 0.3977 MWPFSRKGVSGFSWKSTAEEVTHGIDATGLTAIVTGASSGIGTETTRVLALHGVHVIMAVRNKVNANNTREAILKEIPSAKIDVMELDLSSLESVKKFASEFNSSGLPLNILINNAGVMACPFMLSNDNIELQFATNHLGHFLLTNLLLDTMKKTASESKTEGRIVNVSSEAHKFAYSEGIRFDKINEQSSYSKWGAYGQSKLANILHANQLTKHFKDDGVNIIANSLHPGGIATNLYRHNSAINGIVNVVGKLVMKNVPQGAATTCYVALHPQVKGVSGEYFSDNNVAKSSSHGKDADLAKKLWDFSMNLIKDK* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3726 315 PANTHER RETINOL DEHYDROGENASE 2 314 - -
Mtr1g3726 315 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 289 IPR036291 -
Mtr1g3726 315 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32 2 314 - -
Mtr1g3726 315 Gene3D - 21 315 - -
Mtr1g3726 315 Pfam short chain dehydrogenase 31 178 IPR002347 -
Mtr1g3726 315 CDD retinol-DH_like_SDR_c_like 29 305 - -
Mtr1g3726 315 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Mtr1g3726 315 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Mtr1g3726 315 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Mtr1g3726 315 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3726 Mtr-Chr1 48853892 48859245 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3726 29 172 Lipid Metabolism Gene Families AT1G24470 31.081 5.21e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3726 - - gmx:100784001 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3726 1 48853892 48859245 Mtr1g3726 1 48853892 48859245 ECH