Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3708 ATGAAGAGTGCAAGATTCGAAAATTCCTATGTTATTGGTGTGATATCTGTAGTTCTGATATTGGGATCACTAGCAGAATGCAGAGTACCAAGTAGTATTAAATTGAACAACTTTGATTATCCTGCAATCAATTGCAGAAAACACAGTGCAGTTTTAACAGATTTTGGTGCTGTTGGTGATGGCAAAACCCTTAACACAAAAGCTTTTAATGCAGCAATAACCAACCTTAGCCAATATGCAAATGATGGTGGTGCACAACTTATTGTTCCACCAGGTAAATGGCTAACCGGAAGCTTCAATCTCACAAGCCATTTCACTCTTTTTCTCCAAAAAGATGCTGTTATTCTTGGATCTCAGGATGAATCAGAATGGCCTCAACTTCTTGTTTTACCATCTTATGGAAGGGGAAGAGATGCACCTGCTGGAAGGTTTAGTAGTCTCATTTTTGGAACTAACCTCACTGACGTGATTATTACCGGTGACAATGGGACAATTGATGGACAAGGATCATATTGGTGGGACAAATTCCACAAGAAACAATTGACACTCACTAGACCATACATGATTGAGATTATGTATTCTGATCAAATCCAAATATCAAATCTCACTTTGATCAACTCTCCAACATGGTTTGTTCATCCAATTTACAGCAGTAACATAATTATAAATGGACTTACCATTCTTGCACCAGTAGACTCTCCAAACACAGATGGAATAAACCCAGACTCATGTACAAACGTTAGAATTGAAGACAACTTCATTGTCTCTGGCGATGATTGCATTGCAATAAAAAGTGGATGGGATGAGTATGGAATTAAAGTTGGAATGCCATCACAACAAATAATCATAAGAAGGTTAACTTGTATATCCCCTGATAGTGCTATGGTTGCATTAGGCAGTGAAATGTCAGGTGGAATCCAAGATGTTAGAATTGAAGATGTCACAGCAATCAACACAGAATCCGCTATTAGAATAAAATCTGCTGTCGGTAGAGGTGCTTTTGTGAAGGACATTTTCGTCAAAGGAATGGATTTGAATACAATGAAATATGTGTTTTGGATGACAGGTTCTTATGGAGATCATCCTGATAACGGATTTGATCCAAACGCATTGCCTAAAATTAGTGGAATAAATTATAGAGATGTCACCGCTAAGAATGTGACTATTGCGGGCAAACTTGAAGGAATTTCTAACGACCCTTTTACTGGAATATGTGTTTCTAATGTGACTATTGAAATGAGTGCACATAAGAAGAAACTTCCATGGAATTGCACTGATATTTCTGGAGTTACAAGTAATGTGGTTCCTAAACCATGTGAATTGCTGCAAGAGAAGGAAATTGAATGTCCTTTTCCAACAGATAAACTAGCCATCGAAAATGTTCAATTCAAGACTTGTAACTTCCAAAGTAGTGTCTTCTGA 1422 0.3748 MKSARFENSYVIGVISVVLILGSLAECRVPSSIKLNNFDYPAINCRKHSAVLTDFGAVGDGKTLNTKAFNAAITNLSQYANDGGAQLIVPPGKWLTGSFNLTSHFTLFLQKDAVILGSQDESEWPQLLVLPSYGRGRDAPAGRFSSLIFGTNLTDVIITGDNGTIDGQGSYWWDKFHKKQLTLTRPYMIEIMYSDQIQISNLTLINSPTWFVHPIYSSNIIINGLTILAPVDSPNTDGINPDSCTNVRIEDNFIVSGDDCIAIKSGWDEYGIKVGMPSQQIIIRRLTCISPDSAMVALGSEMSGGIQDVRIEDVTAINTESAIRIKSAVGRGAFVKDIFVKGMDLNTMKYVFWMTGSYGDHPDNGFDPNALPKISGINYRDVTAKNVTIAGKLEGISNDPFTGICVSNVTIEMSAHKKKLPWNCTDISGVTSNVVPKPCELLQEKEIECPFPTDKLAIENVQFKTCNFQSSVF* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3708 473 Gene3D - 34 436 IPR012334 -
Mtr1g3708 473 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 16 467 - -
Mtr1g3708 473 Pfam Glycosyl hydrolases family 28 147 427 IPR000743 GO:0004650|GO:0005975
Mtr1g3708 473 PANTHER PECTIN LYASE-RELATED 16 467 - -
Mtr1g3708 473 SUPERFAMILY Pectin lyase-like 45 446 IPR011050 -
Mtr1g3708 473 SMART pbh1 244 265 IPR006626 -
Mtr1g3708 473 SMART pbh1 306 327 IPR006626 -
Mtr1g3708 473 SMART pbh1 217 243 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3708 Mtr-Chr1 48717756 48719803 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3708 28 471 Glycoside Hydrolase AT3G61490 67.401 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3708 - - gmx:100779166 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3708 1 48717756 48719803 Mtr1g3708 1 48717756 48719803 ECH