Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3707 ATGTCTCATAAAAACATGATGAAGAGTCCAGTATTCGAAAATTCCTATGTTATTGGTGTGATCTCTGTACTTCTGATATTTGGTTCATTAGCAGAATGCAAAGAACCAAGTAGTAGTAAATTGAAGAACTTTGATTATCCAGCTATCAATTGCAGAAAACACAGTGCAGTTTTGACAGATTTTGGTGGTGTTGGTGATGGAAAAACCCTTAACACAAAGGCATTTAATTCAGCAATAACCAATCTTAGCCAATATGCAAATGATGGTGGTGCACAACTTATTGTTCCACCAGGTAAATGGCTAACCGGAAGCTTCAATCTCACAAGCCATTTCACTCTTTTTCTCCAAAAAGATTCTGTCATTCTTGCATCTCAGGATGAATCAGAATGGCCTCAATTCCCTGTTTTACCTTCTTATGGAAGTGGAAGGAATGCATCTGATGGAAGGTTTAGCAGTCTCGTTTTTGGAACTAACCTCACTGATGTTATAATTACTGGTAACAATGGGACAATTGATGGACAAGGATCTTATTGGTGGGACAAGTTCCACAAGGGACAAATGAAAATCACTAGGCCATACATGATTGAGATTATGTATTCTGATCAAATCCAAATATCCAATCTCACTTTGATCAATTCCCCTTCTTGGTTTGTCCATCCAGTTTACAGCAGTAACATAATTATAAATGGACTTACAATTCTTGCACCAGTCGACATTCCTAACACGGATGGCATAGACCCAGATTCATGTACAAACGTCAGAATTGAAGACAACTATATAGTTTCTGGTGATGATTGTATTGCAATAAAAAGTGGATGGGATGAGTATGGAATCAAATTTGGAAAGCCATCTCAACAAATAATCATAAGAAGGCTAACATGTATATCCCCTAAAAGTGCAATGGTTGCATTAGGCAGTGAAATGTCAGGTGGAATCCAAGATGTTAGAGTTGAAGACGTCACGGCAATCAAGACAGAATCGGCTGTTAGAATCAAAACAGCCATCGGTAGAGGCGCATATGTGAAGGACATTTTTGTCAAAGGAATGAATTTGGACACAATGAAATATGTTTTTTGGATGACAGGGTCTTATAAGTCACACCCTGATAATGGATTTGATCCAAACGCATTGCCTAAAATTAGTGAAATAAATTATAGAGATGTTACTGCCAAGAATGTGACTATTGCAGGCAAACTTGATGGAATTTCTAATGACCCTTTTACTGGAATTTGTGTTTCTAATGCGACTATTGAAATGAGTGCACATAAGAAGAAACTTCCATGGAATTGCACTGATGTTTCTGGAGTTACAAGTAATGTGAGTCCTACACCCTGTGAATTGCTGGCAGAGAAAGAAAAATTTGAATGTCCTTTTCCAACTGATAAACTTACCATTGAAAATGTTCAGTTCAAGACTTGTAACTTCAAAAGTAGTGTCATTAGATAA 1446 0.3714 MSHKNMMKSPVFENSYVIGVISVLLIFGSLAECKEPSSSKLKNFDYPAINCRKHSAVLTDFGGVGDGKTLNTKAFNSAITNLSQYANDGGAQLIVPPGKWLTGSFNLTSHFTLFLQKDSVILASQDESEWPQFPVLPSYGSGRNASDGRFSSLVFGTNLTDVIITGNNGTIDGQGSYWWDKFHKGQMKITRPYMIEIMYSDQIQISNLTLINSPSWFVHPVYSSNIIINGLTILAPVDIPNTDGIDPDSCTNVRIEDNYIVSGDDCIAIKSGWDEYGIKFGKPSQQIIIRRLTCISPKSAMVALGSEMSGGIQDVRVEDVTAIKTESAVRIKTAIGRGAYVKDIFVKGMNLDTMKYVFWMTGSYKSHPDNGFDPNALPKISEINYRDVTAKNVTIAGKLDGISNDPFTGICVSNATIEMSAHKKKLPWNCTDVSGVTSNVSPTPCELLAEKEKFECPFPTDKLTIENVQFKTCNFKSSVIR* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3707 481 Pfam Glycosyl hydrolases family 28 146 434 IPR000743 GO:0004650|GO:0005975
Mtr1g3707 481 Gene3D - 34 444 IPR012334 -
Mtr1g3707 481 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 23 474 - -
Mtr1g3707 481 PANTHER PECTIN LYASE-RELATED 23 474 - -
Mtr1g3707 481 SUPERFAMILY Pectin lyase-like 51 461 IPR011050 -
Mtr1g3707 481 SMART pbh1 250 271 IPR006626 -
Mtr1g3707 481 SMART pbh1 223 249 IPR006626 -
Mtr1g3707 481 SMART pbh1 312 333 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3707 Mtr-Chr1 48714528 48716707 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3707 38 478 Glycoside Hydrolase AT3G61490 67.556 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3707 - - gmx:100779166 778.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3707 1 48714528 48716707 Mtr1g3707 1 48714528 48716707 ECH