Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3696 ATGCAAATGCTATGTACCAAAACTTTTTCACTATCCCGCTTCCAAGAAACTTGTTTACGTGTTCTTTCATTCTGCAACTCAAACTCTCTCAAAGAAGGAATATGCATTCATAGCCCCATAATCAAACTTGGTCTTCAACATGACTTGTATTTAACCAACAATTTACTCTCTTTATATGCTAAAACCTTTGGAGTTCATCGAGCACGCCACTTGTTCGATGAAATGCCTAACAGAGACGTCGTATCATGGACAACGATTCTGTCTTCACACACCAAGACTAAGCATCATTCTGATGCCCTGCAGTTGTTTGATATGATGATAGGTTCTGGTGAGTATCCGAATGAGTTTACACTGTCTAGTGCGTTAAGGTCGTGTTTTGCTTTAGGAGAGTTTGAACGTGGGATGCAGATTCATTGTTCTGCTGTGAAGCTTGGGTTAGAGATGAATCGTTTTGTTGGAACTTCTTTGGTTGAGTTTTATACCAAGTGTGGTTGTTGTAGTGTTGAAGCGTGGAAATTGCTTTCGTTGGTGAAGGATGGCGGTGATGTTGTGTCTTGGACGACAATGTTGTCTTCTTTAGTGGAAAATGGTAAATGGGGTGAAGCTTTTGAAATCTATGTTAAAATGATTGAATCAGGTGTTTATCCGAATGAATTTACGTTTGTTAAATTGTTAGGTGCCGTGTCTTCCTTTCTTGGTTTATCGTATGGGAAACTGCTGCATGCACATTTAATCATGTTTGGTGCTGAATTGAATTTGGTGTTGAAGACAGCTGTTGTTGATATGTATTCAAAATGCAGACGGATGGTCGATGCTATTAAGGTTTCTAATCTGACACCTGAATATGATGTGTACTTATGGACCACCCTTATCTCTGGATTTACTCAAAATTTGCAGGTTAGAGAGGCTATCAGTGTTTTTCGTGATATGGAATTATCTGGCCTCCTACCAAATAATTTTACGTATTCTAGTTTATTGAATGCTAGCTCCTCAATTTTATCATTGGACTTAGGGGAACAATTTCATTCGCGGGTTATCATTGTTGGACTTGAGGATGATCTTTATATAGGAAATGCACTGGTTGATATGTACATGAAATGCTCCCACATCACTACAAATGCTGTGAAAGTTTTTAGAGAGATAACATCACCAAATGTCATGTGTTGGACTTCTTTGATTGCTGGTTTTGCAGAAAAAAGATTAGAAGATTCTTTTCAGTTGTTTGCTGAGATGCAAGCAGCAGGAGTAAGACCGAATTCCTTTACAATGTCTGCCATTCTTGGAGCTTGCAGCAAAACGAGGTCTCTTGTTCCAACAATGATGCTCCATGGACATATCATAAAAACAAAAGTAGACATAGATATAGCTGTTGCGAATGCTCTTGTAGATACTTATGCTGGAGTGGGGATGATTGACGAGGCATGGTCTGTAATTGGTACAATGAATCTTAGAGATTCAATCACGTACACATGTTTAGCCGCAAGGCTAAACCAGAAGGGGCATCATGGAATGGCATTAAAAGTTTTGATTCACATGTGCAATGATGGGATTAAAATGGATGAATTTAGCTTGGCAAGTTTCTTATCAGCTGCAGCTGGCTTAGGCACTATGGAAACTGGAAAGCAGCTGCATTGTTATTCTGTCAAATCAGGCTTCCAGAGATGTCACTCAGTTTCAAACAGCTTAGTTCACTTGTACAGCAAATGTGGTAGTATTCACGATGCAAATAGAGCTTTTAAAGATATTAGTGAGCCAGATGCATTTTCATGGAACGGTTTGATATCTGGATTTTCTTGGAATGGCTTGATATCCCATGCTCTTTCTACTTTTGATGACATGAGGTTAGCAGGAGTTAAACCTGATTCTATAACACTGTTGTCGCTGATTTCTGCTTGCAGCCATGGCGGCTTATTAGAACTGGGTCTTGAGTATTTCCATTCTATGCAAAAAGAATACCATATAACCCCAAAACTAGATCACTACATGTGTTTAGTTGATCTTCTTGGTAGAGGTGGTCGCCTAGAGGAAGCTATGGGAGTTATTGAAAAAATGTCTTTCAAGCCAGACTCTTTGATTTGTAAAACTTTATTAAATGCTTGCAATTTACACGGAAATGTTGCTCTAGGAGAAGATATGGCAAGGCGATGTCTTGAGCTTGATCCATCTGATCCTGCAATATATTTGTTGCTTGCAAACTTATATGACAACGCTGGACTCTCTGATTTTGGAGAGAAGACACGTCGGTTGATGAGAGAAAGAGGTTTAAGGAGAAGTCCTGGGCAGTGCTGGATGGAGATAAGAAGCAGAGTTCATCACTTCTCCGCAGGAGAGAAGATAAACGAAGACGAGATTACTGAAAAGCTGGAGTTTCTTATAACTGAATTTAGGAATAGGCGGTATCAATACCAAGAGAATGAAGATAAGTTTTACCACCCAGAGCAATTGGCAGTTGCATTTGGTGTTCTTAATGCACCATCTACGTCTCCAATTCGTATATACAAGAATTCACTGATCTGCTCTCACTGCCATACTTTTATAATGCTTTCCACGCAAGTGATTGGTAGGGAGATAATTATGAGGGATAGGAAACGGTTCCATTTCTTTAAGGATGGACAATGTTCTTGCAGAGGTCACCTATGA 2640 0.3943 MQMLCTKTFSLSRFQETCLRVLSFCNSNSLKEGICIHSPIIKLGLQHDLYLTNNLLSLYAKTFGVHRARHLFDEMPNRDVVSWTTILSSHTKTKHHSDALQLFDMMIGSGEYPNEFTLSSALRSCFALGEFERGMQIHCSAVKLGLEMNRFVGTSLVEFYTKCGCCSVEAWKLLSLVKDGGDVVSWTTMLSSLVENGKWGEAFEIYVKMIESGVYPNEFTFVKLLGAVSSFLGLSYGKLLHAHLIMFGAELNLVLKTAVVDMYSKCRRMVDAIKVSNLTPEYDVYLWTTLISGFTQNLQVREAISVFRDMELSGLLPNNFTYSSLLNASSSILSLDLGEQFHSRVIIVGLEDDLYIGNALVDMYMKCSHITTNAVKVFREITSPNVMCWTSLIAGFAEKRLEDSFQLFAEMQAAGVRPNSFTMSAILGACSKTRSLVPTMMLHGHIIKTKVDIDIAVANALVDTYAGVGMIDEAWSVIGTMNLRDSITYTCLAARLNQKGHHGMALKVLIHMCNDGIKMDEFSLASFLSAAAGLGTMETGKQLHCYSVKSGFQRCHSVSNSLVHLYSKCGSIHDANRAFKDISEPDAFSWNGLISGFSWNGLISHALSTFDDMRLAGVKPDSITLLSLISACSHGGLLELGLEYFHSMQKEYHITPKLDHYMCLVDLLGRGGRLEEAMGVIEKMSFKPDSLICKTLLNACNLHGNVALGEDMARRCLELDPSDPAIYLLLANLYDNAGLSDFGEKTRRLMRERGLRRSPGQCWMEIRSRVHHFSAGEKINEDEITEKLEFLITEFRNRRYQYQENEDKFYHPEQLAVAFGVLNAPSTSPIRIYKNSLICSHCHTFIMLSTQVIGREIIMRDRKRFHFFKDGQCSCRGHL* 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3696 879 Pfam PPR repeat family 384 431 IPR002885 -
Mtr1g3696 879 Pfam PPR repeat family 283 328 IPR002885 -
Mtr1g3696 879 Pfam PPR repeat family 78 125 IPR002885 -
Mtr1g3696 879 Pfam PPR repeat family 585 633 IPR002885 -
Mtr1g3696 879 Pfam PPR repeat family 182 227 IPR002885 -
Mtr1g3696 879 Gene3D Tetratricopeptide repeat domain 140 230 IPR011990 GO:0005515
Mtr1g3696 879 Gene3D Tetratricopeptide repeat domain 438 547 IPR011990 GO:0005515
Mtr1g3696 879 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Mtr1g3696 879 Gene3D Tetratricopeptide repeat domain 10 137 IPR011990 GO:0005515
Mtr1g3696 879 Gene3D Tetratricopeptide repeat domain 559 794 IPR011990 GO:0005515
Mtr1g3696 879 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Mtr1g3696 879 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 418 IPR002885 -
Mtr1g3696 879 Pfam PPR repeat 661 684 IPR002885 -
Mtr1g3696 879 Pfam DYW family of nucleic acid deaminases 808 877 IPR032867 GO:0008270
Mtr1g3696 879 Gene3D Tetratricopeptide repeat domain 338 437 IPR011990 GO:0005515
Mtr1g3696 879 Gene3D Tetratricopeptide repeat domain 237 337 IPR011990 GO:0005515
Mtr1g3696 879 TIGRFAM PPR: pentatricopeptide repeat domain 184 218 IPR002885 -
Mtr1g3696 879 TIGRFAM PPR: pentatricopeptide repeat domain 588 622 IPR002885 -
Mtr1g3696 879 TIGRFAM PPR: pentatricopeptide repeat domain 285 318 IPR002885 -
Mtr1g3696 879 TIGRFAM PPR: pentatricopeptide repeat domain 81 115 IPR002885 -
Mtr1g3696 879 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Mtr1g3696 879 Pfam E motif 703 765 IPR046848 -
Mtr1g3696 879 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 586 620 IPR002885 -
Mtr1g3696 879 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 15 330 - -
Mtr1g3696 879 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 316 776 - -
Mtr1g3696 879 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 111 433 - -
Mtr1g3696 879 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 234 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3696 Mtr-Chr1 48630515 48633674 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3696 99 878 Glycoside Hydrolase AT3G49170 33.210 1.01e-147 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3696 - - gmx:100791770 1320.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3696 1 48630515 48633674 Mtr1g3696 1 48630515 48633674 ECH