Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3683 ATGGAGAAGATCCATTACGCGGAAGAATTAGTCCGTGAATTTCTCGTCTTCAGAGGATTCACCACCACACTCCAATCTTACGAAACCGAATTACGCACCGACGTCGGAAAATCATTTCACGTTGATAAAATTCTCGACCTTATTTTCTCCATTTATATTACTAATTTTCACATCGATAAATTGATTTCACTTCTCTCTTTCTTCAAACATTATCTCTCTTCATCTTCCCAATCCACACTCCTTTCATCATTCTCCAAATTGGAAGCTTCCATTCTACGATTCTACGTTGTTCGTGCCTTGCAATCCAACAACAGGGATAAAGTTGTTGAGTTTTTCCATGTTTATGGTCCTGATTTGTTGCAGAGTTCCTCTCAGGAGGATTGGACTCAATGGTTTGTGATTCCTTATGTGAAGAATCCACAATTGGATCCTCAATTTCGAGTATTTTTCGGGAAGGAGTGGAGTCAGGCATTACATCTTTCTGTTAGAAATTTCTTTAGTGAGATCTTCAATGCTACTCGTCTCCCTGCTCTACTGAAGATCAGTTCGGAGATGAATTCTACCAACATGCTCAAAAGAGATATCACACAGCTAAATATCAAATTGTCAGAACTTCAGGCTTTACTCAATGAGAAAGAAACTCAATTAAGGCAGTTTAGAAGTATGGAAGGAAGTATTAGCTCATCAAGCAATTTGCGTGAAGAAAGTACTCATGTATCAAAAGATTCTTCAGAGATTGACCAAGATTTAGTTGTGGGTGAACCTGGAAATGTTCAGTCCGAGTTTATCAGCTCCAAGTCTGGTGATGATTCAACTTTCATATTGAATGACTATCTGGAACATGGCAGAGCTGGCAATACCACTCTAAAAGAAAACGATGGGGAATTGTCTTCTGAAGAAGACTTTGTTGAGGTCAAAGTAGAGCACCAGGAGACTTTTTTGGGGCACACCAGTCCAATCAGCCGGTGCCGCTTCTCTGCGTCTGGAAACAATATAGCCAGTGCTTCTCTAGATGGAACTGCCAGGATATGGACATATGATGCATCAACTCCAGCTTCTAGAAATGCAACCATATATTGTGGCACTGAAATTTTGTCACTTGATTGGGAATGCAAATCGGATCGATTGCTTCTAATAGGTACATCCGATGCATGCATTAAGGCATGGAATGTGGACGCTAAAAGAGTTGTTTGTGACCTTAACACAACGGAAGCATTTCCTAGTGTACTGGACATAAAGTGCAGTCCTGTTGAACCTATTTTTGTATCTGCAGCAGCATCTGGAGGGTCTGGTTCTAACTATTTTGACAACCTGGGTTTCGCTTCACTGACTGTATGGAACATGAAGACATGGAAAGCCATGACAGTCCTTCCTCTTGGAGAAGATCCACCGGCAATTACTTCTCTATGCTTCAACCACAATGGGAAAATTTTAGCAGCTTCGGCTGTGGATGGAATGATTCACATGTTTGACATGTCTGCTGGTCTACAAATCACTGGCTGGCCTGCACATGATTCTTCCATCAGTTCTATTCTTTTTGGACCAGATGAGACTAGCATTTTTAGCCTCGGCTCTGATGGGAAGATTTTTGAGTGGAGCTTGCAAAATCAAGGCCAAATCTTGTGGTCAAGAGACTGTAGTAGGTACTGTTACCCCAGTTCAAATTATTACAGACATGATATGGCATTAGATGCAAATGGGAGGAGACTCTTGGTAACATCCAGTTCAGATAGAGCACCCATATATCAGGTTCAGGGTCATTTGAATGGTTGGAGAACACTTTCTCACGGTGCTCCTATCACTGCTGTAGATTGGCATCCGACCTTGCCCATTTTCTTGACTGGATCAGCCGATAACTCTGTCCGAGTAACATCTTTACTATCATAG 1887 0.4155 MEKIHYAEELVREFLVFRGFTTTLQSYETELRTDVGKSFHVDKILDLIFSIYITNFHIDKLISLLSFFKHYLSSSSQSTLLSSFSKLEASILRFYVVRALQSNNRDKVVEFFHVYGPDLLQSSSQEDWTQWFVIPYVKNPQLDPQFRVFFGKEWSQALHLSVRNFFSEIFNATRLPALLKISSEMNSTNMLKRDITQLNIKLSELQALLNEKETQLRQFRSMEGSISSSSNLREESTHVSKDSSEIDQDLVVGEPGNVQSEFISSKSGDDSTFILNDYLEHGRAGNTTLKENDGELSSEEDFVEVKVEHQETFLGHTSPISRCRFSASGNNIASASLDGTARIWTYDASTPASRNATIYCGTEILSLDWECKSDRLLLIGTSDACIKAWNVDAKRVVCDLNTTEAFPSVLDIKCSPVEPIFVSAAASGGSGSNYFDNLGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSSISSILFGPDETSIFSLGSDGKIFEWSLQNQGQILWSRDCSRYCYPSSNYYRHDMALDANGRRLLVTSSSDRAPIYQVQGHLNGWRTLSHGAPITAVDWHPTLPIFLTGSADNSVRVTSLLS* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3683 628 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 354 IPR001680 GO:0005515
Mtr1g3683 628 Coils Coil 188 222 - -
Mtr1g3683 628 SUPERFAMILY WD40 repeat-like 302 623 IPR036322 GO:0005515
Mtr1g3683 628 SMART WD40_4 450 491 IPR001680 GO:0005515
Mtr1g3683 628 SMART WD40_4 351 390 IPR001680 GO:0005515
Mtr1g3683 628 SMART WD40_4 494 533 IPR001680 GO:0005515
Mtr1g3683 628 SMART WD40_4 306 345 IPR001680 GO:0005515
Mtr1g3683 628 SMART WD40_4 587 625 IPR001680 GO:0005515
Mtr1g3683 628 Pfam WD domain, G-beta repeat 310 344 IPR001680 GO:0005515
Mtr1g3683 628 Pfam WD domain, G-beta repeat 593 623 IPR001680 GO:0005515
Mtr1g3683 628 ProSiteProfiles Trp-Asp (WD) repeats profile. 593 628 IPR001680 GO:0005515
Mtr1g3683 628 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 593 628 - -
Mtr1g3683 628 Gene3D - 556 628 IPR015943 GO:0005515
Mtr1g3683 628 Pfam Anaphase-promoting complex subunit 4 WD40 domain 460 513 IPR024977 -
Mtr1g3683 628 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 313 344 - -
Mtr1g3683 628 PANTHER OS05G0299300 PROTEIN 1 626 - -
Mtr1g3683 628 Gene3D - 429 555 IPR015943 GO:0005515
Mtr1g3683 628 Gene3D - 179 428 IPR015943 GO:0005515
Mtr1g3683 628 ProSiteProfiles Trp-Asp (WD) repeats profile. 501 536 IPR001680 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3683 K24760 - gmx:100788591 1015.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3683 1 48515777 48522502 Mtr1g3683 1 48515777 48522502 ECH