Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3680 ATGGCAAAGAATTCTCATACCTTGTCACTTTTTCTTTTCCTCACTCTTGTTAGAACCTCCTATGCTGGTGGCATAGCCATCTACTGGGGCCAAAATGGTGAAGAAGGCTCACTGTATGAAACATGTGCCACTGGGAGATACACCCACATAAACATTGCCTTCCTCTCCAGATTCGGCAAAGGTCGAACCCCTACGTTGAACTTAGCAGGTCACTGCAACCCTTCAACTAATTCATGCACCAAATTAAGTCACAGCATCAAGTATTGCCAGAGCAGAGGTATCACAATGTTTCTTTCTATCGGCGGTGGACTCGGAAGATACTCTTTGTCTTCAATTGAGGATGCTAGAAGCTTCTCAAGATATTTATGGAACACTTTCTTGGGTGGCACGTCATATTCAAGACCATTTGGTGATGCTGTGTTAGATGGCATAGATTTTGACATTGAAATTGGTTCCACAAAAAATTGGCAACACCTTGCACGATTTCTCAAGGATTATAACGGGGTTTATCTAAGTGCTGCTCCTCAATGTCCATTTCCTGATAGATTCTTAGGAAGAGCCCTTGAAACAGGACTTTTTGACTTTGTTTGGGTTCAGTTCTATAATAATCAAGCATGTGATTATAATAAACATAGAATGAATAACCTTGTGAGTTCATGGAAACATTGGACAACTACTATTCCAGCTTGGAAGATATTTTTGGGGTTGCCGGCGGCTAAGGACGCAGCTGGAAGCGGTTTTATTCCGGCCAATGTGTTGACGTCTCAAATCCTACCTCTGATTCAGGATACATCAAAGTATGGAGGTGTAATGCTTTGGTCAAGATACTTTGATGAGTGGACTGGTTATAGCAGTTCCATTATCGCTAGCGTGTGA 876 0.4212 MAKNSHTLSLFLFLTLVRTSYAGGIAIYWGQNGEEGSLYETCATGRYTHINIAFLSRFGKGRTPTLNLAGHCNPSTNSCTKLSHSIKYCQSRGITMFLSIGGGLGRYSLSSIEDARSFSRYLWNTFLGGTSYSRPFGDAVLDGIDFDIEIGSTKNWQHLARFLKDYNGVYLSAAPQCPFPDRFLGRALETGLFDFVWVQFYNNQACDYNKHRMNNLVSSWKHWTTTIPAWKIFLGLPAAKDAAGSGFIPANVLTSQILPLIQDTSKYGGVMLWSRYFDEWTGYSSSIIASV* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3680 291 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 23 291 IPR001223 GO:0005975
Mtr1g3680 291 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 141 149 IPR001579 GO:0004553|GO:0005975
Mtr1g3680 291 CDD GH18_hevamine_XipI_class_III 23 289 IPR045321 -
Mtr1g3680 291 Pfam Glycosyl hydrolases family 18 25 274 IPR001223 GO:0005975
Mtr1g3680 291 Gene3D Glycosidases 23 291 - -
Mtr1g3680 291 PANTHER ACIDIC ENDOCHITINASE 6 291 - -
Mtr1g3680 291 PANTHER ENDOCHITINASE 6 291 - -
Mtr1g3680 291 SUPERFAMILY (Trans)glycosidases 22 287 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3680 Mtr-Chr1 48493517 48494634 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3680 1 291 Glycoside Hydrolase AT5G24090 58.528 9.22e-129 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3680 K01183 - gmx:100809864 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3680 1 48493517 48494634 Mtr1g3680 1 48493517 48494634 ECH