Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3678 ATGGCAAAAAACTCTCACACCTTTTTGTCTCTTATTCTTCTATTCCTCACTCTAGTTGCAACTTCCCATGCTGGTGGCATAGCAATCTATTGGGGCCAAAATGGCAACGAGGGAACCTTATCCGAAGCATGCGCAACCGGAAAATACTCCCATGTTAACATAGCTTTCCTAAACAAATTCGGTAACGGTCAAACCCCTGAAATGAATCTCGCAGGTCATTGCAACCCATCACTTCCAAATTCATGCACAAAATTCAGCTCAGAAATCAAAGATTGCCAAAGTAAAGGAATCAAAGTTTTACTTTCAATTGGTGGCGGAATTGGAAGCTATTCTTTATCTTCAATTGAGGATGCAAGAAACGTTTCAAAATTTTTATGGAACACTTTCTTGGGTGGCAAGTCATCTTCAAGACCATTAGGTGATGCTGTTTTAGATGGAATAGATTTTGATATTGAACTTGGTTCCACCGAAAATTGGCAACACCTTGCAGGTTTTCTTAAAGGGTATAGTAGATATGGAAAAAAGGTGTATCTTGGTGCTGCTCCTCAATGTCCAATTCCAGATAAATTTTTGGGCACTGCACTTGAAACAGGTCTTTTTGACTTTGTTTGGGTACAATTTTACAATAATCCTCCTTGTCAATATAATGGAAACATAACTAACCTTGTGAATTCATGGAATAAATGGAATAGTAATGTTCCAAGAGGGAAGATATTTTTAGGGCTGCCGGCGTCTACGGCGGCGGCCGGAAGTGGTTTTATCCCGGCAGATGTGTTGACTTCAGAAATATTACCTGTAATTAAGAAGTCAAGAAAGTATGGAGGAGTGATGCTTTGGTCAAGGTTTCATGATGTGCAGACTGGGTATAGCACTTCTATTATTGGAAGCGTGTGA 894 0.3982 MAKNSHTFLSLILLFLTLVATSHAGGIAIYWGQNGNEGTLSEACATGKYSHVNIAFLNKFGNGQTPEMNLAGHCNPSLPNSCTKFSSEIKDCQSKGIKVLLSIGGGIGSYSLSSIEDARNVSKFLWNTFLGGKSSSRPLGDAVLDGIDFDIELGSTENWQHLAGFLKGYSRYGKKVYLGAAPQCPIPDKFLGTALETGLFDFVWVQFYNNPPCQYNGNITNLVNSWNKWNSNVPRGKIFLGLPASTAAAGSGFIPADVLTSEILPVIKKSRKYGGVMLWSRFHDVQTGYSTSIIGSV* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3678 297 CDD GH18_hevamine_XipI_class_III 25 295 IPR045321 -
Mtr1g3678 297 SUPERFAMILY (Trans)glycosidases 22 293 IPR017853 -
Mtr1g3678 297 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 25 297 IPR001223 GO:0005975
Mtr1g3678 297 PANTHER ACIDIC ENDOCHITINASE 3 297 - -
Mtr1g3678 297 PANTHER ENDOCHITINASE 3 297 - -
Mtr1g3678 297 Pfam Glycosyl hydrolases family 18 27 283 IPR001223 GO:0005975
Mtr1g3678 297 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 144 152 IPR001579 GO:0004553|GO:0005975
Mtr1g3678 297 Gene3D Glycosidases 25 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3678 Mtr-Chr1 48482480 48483602 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3678 1 297 Glycoside Hydrolase AT5G24090 63.758 1.15e-142 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3678 K01183 - gmx:100818728 487.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3678 1 48482480 48483602 Mtr1g3678 1 48482480 48483602 ECH