Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3677 ATGGCATCCTTCAAACAAGTTTCAATCCTGTTATTCCCTCTTTTCCTCATTTCCCTATTCAAATCCTCTCATGCTGCAGGAATTGCTGTCTATTGGGGTCAAAACGGCAACGAAGGTTCCTTAGCAGATGCTTGCAACACAAACAACTACCAATTTGTAAACATAGCTTTTCTATCCACTTTTGGCAATGGCCAAACTCCAACTCTAAACCTTGCTGGCCATTGTGATCCAGCCTCAAACGGTTGCACAAAGTTTAGTAGTGAAATTCAAACTTGTCAAAGCAAAGGCATCAAAGTGTTGCTATCTCTCGGAGGTGGTGCCGGAAGCTACTCTCTTTCCTCAGCTGATGATGCCACGCAGGTTGCAAATTACCTATGGAACAATTTCTTGGGTGGCACGTCATCTTCAAGACCTTTAGGTGATGCTGTTTTGGATGGAATTGATTTTGATATTGAAGCTGGTGGTGAACACTATGATGACCTTGCAAGAGCACTTAATGGTTTTAGCTCACAAAGGAGAGTTTACTTGTCTGCAGCACCTCAATGTCCTTTCCCTGATGCTCATTTGGATTCGGCTATTAATACCGGTTTATTTGATTATGTGTGGGTTCAGTTTTATAATAATCCTCAGTGCCAATACTCAAGTGGAAACACTAACAATCTTGTTAATGCTTGGAATCAATGGACTTCAAGTCAAGCTAAACAAGTGTTTTTAGGTGTACCTGCTAATGATGCTGCTGCTCCAAGTGGTGGTTTTATTCCTTCTGATGTTTTGATTTCTCAAGTTCTTCCTGCTATTAAGGGTTCTGCTAAATATGGTGGTGTTATGATTTGGGATAGATTCAATGATGGACAAAGTGGATACAGTAATGCTATTAAGGGCAGTGTTTAA 891 0.4074 MASFKQVSILLFPLFLISLFKSSHAAGIAVYWGQNGNEGSLADACNTNNYQFVNIAFLSTFGNGQTPTLNLAGHCDPASNGCTKFSSEIQTCQSKGIKVLLSLGGGAGSYSLSSADDATQVANYLWNNFLGGTSSSRPLGDAVLDGIDFDIEAGGEHYDDLARALNGFSSQRRVYLSAAPQCPFPDAHLDSAINTGLFDYVWVQFYNNPQCQYSSGNTNNLVNAWNQWTSSQAKQVFLGVPANDAAAPSGGFIPSDVLISQVLPAIKGSAKYGGVMIWDRFNDGQSGYSNAIKGSV* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3677 296 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 296 IPR001223 GO:0005975
Mtr1g3677 296 PANTHER ENDOCHITINASE 13 296 - -
Mtr1g3677 296 Pfam Glycosyl hydrolases family 18 28 280 IPR001223 GO:0005975
Mtr1g3677 296 Gene3D Glycosidases 26 296 - -
Mtr1g3677 296 CDD GH18_hevamine_XipI_class_III 26 294 IPR045321 -
Mtr1g3677 296 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 144 152 IPR001579 GO:0004553|GO:0005975
Mtr1g3677 296 PANTHER ACIDIC ENDOCHITINASE 13 296 - -
Mtr1g3677 296 SUPERFAMILY (Trans)glycosidases 24 292 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3677 Mtr-Chr1 48478993 48480140 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3677 1 296 Glycoside Hydrolase AT5G24090 61.462 3.93e-130 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3677 K01183 - gmx:100783329 499.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3677 1 48478993 48480140 Mtr1g3677 1 48478993 48480140 ECH