Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3161 ATGGCTGTCACAACTTCCTTTCTGAATTCAACAGAGAAAAAACAACACTGGTGGCTCACAAACCGTAAGATTGTTGAGAAATATATCAAAGATGCAAGAACACTCATTGCAACACAAGAACGAAACGAGATTGTTTCAGCTATAAGTCTTCTAGACTCAGCTTTAGCTATTTCTCCAAGTTCAGATCAAGCCCTAGAGATGAAAGCAAGATCTTTGCTCTATTTGAGAAGATTCAAAGACGTAGCAAATATGCTTCAAGATTATATTCCAAGTTTGAAAATGGCTAATGATGATTCTGGCTCTGTTTCTTCTTCTTCTGATGGTTCTTCTCAACAGCTTTCAAGAGAAGGTGTGAAGTTACTTTCTTCATCGGATTCCTCTGCTCCAGATCAGAGCTACTTCAAGTGTTTCTCTGTTTCTGATTTGAAAAAACGTGTCATGGCTGGTCTCTGTAAAAGTTATGACAATGAAGGATATTGGAGATACTTGGTTTTGGGCAAAGCATGTTGTCACTTAGGCCTAATGGAAGATGCAATGGTTCTTTTGCAAACCGGAAAACGTCTCGCGAGTGCAGCATTTCGTCGTGAAAGCGTTTGTTGGTCTGATGACAGCTTCTCCCTGTGGAGCTCACCGTTCTCCGGTGATGGTGCTTTGTCAAAGCAATCAACAACCACTCCACCAAAAAGTCCTTTATCAGAATCTGAAACTGTGAACCAACTCCTAGCACATATAAAATTCCTCCTGCGTCGACGTGCGGCTGCAATAGCCGCAATGGACGCAGGACTCCACTCAGAAGCCATCCGTCACTTCTCTAAAATTGTTGATGGCCGCCGCGGCGCTCCTCAAGGATTCCTTGCAGAATGCTACATGCATAGAGCCTCTGCTTTTCGTTCTGCAGGTAGAATTGCTGACTCAATTGCTGATTGTAACAGAACACTATCATTAGACCCTACATGTATCCAAGCACTGGAAGCTAGAGCTTCAATTCTAGAAACAATTCGTTGCTACCAAGATTGTCTACATGATCTTGAACATTTGAAGCTTCTATACAACACAATTTTGCGTGATCGAAAACTTGCTGGACCGTTATGGAAACGACATAATGTTCGTTACAATGAGATTCCTGGGAAATTATGCACCTTAACCGCAAAAATTCAACAATTGAAACAAAAATTGTCTTGTGGCGAAACGCGTAATGTGGACTATTATGGTTTGATTGGTTTAAGACGTGGTTGTGCCCGTTCGGAATTGCAACGGGCACATCTTTTGCTTAGTTTGAAACATAAACCAGAGAAAGCTATTGGTTTCATTGAACGGTGTGAACTCGCGGATGAACGTGATCTTGAATCGGTTAAGGATAGAGCTAGAATGGCTTCCATGTTGTTGTATAGGTTGCTTCAAAAAGGTTATACAAATGTTATGAATACAATTCTTGAAGAAGAAGCTTCTGCTGAGAAACAGAAGAAAATGGTTTTGCAGTTACAACAAACAAATGCAAATGTACATGTTATTCAAGCTTCTACAAATGCACATGTTACTCAAGCTTCTACAAATGCACATGTTAATGTTAATGTGAATGTGAATGCAGTTGTTGAAGTGTTACAAAAGAAAAGTAGAGAAGAAATGTTGGAGGAAAAGTATGCAATGTCTTCACCAAGCATAGTGAATCCAACGGTGTTTCAAGGAGTGTTTTGCCGTGATCTAACGGTGGTGGGGAACTTGCTTTCACAAAGGTTTAGTAATAGGTCAATTCCAGTGAAGTACGAGGCTCTTAGTTGTTGA 1782 0.4057 MAVTTSFLNSTEKKQHWWLTNRKIVEKYIKDARTLIATQERNEIVSAISLLDSALAISPSSDQALEMKARSLLYLRRFKDVANMLQDYIPSLKMANDDSGSVSSSSDGSSQQLSREGVKLLSSSDSSAPDQSYFKCFSVSDLKKRVMAGLCKSYDNEGYWRYLVLGKACCHLGLMEDAMVLLQTGKRLASAAFRRESVCWSDDSFSLWSSPFSGDGALSKQSTTTPPKSPLSESETVNQLLAHIKFLLRRRAAAIAAMDAGLHSEAIRHFSKIVDGRRGAPQGFLAECYMHRASAFRSAGRIADSIADCNRTLSLDPTCIQALEARASILETIRCYQDCLHDLEHLKLLYNTILRDRKLAGPLWKRHNVRYNEIPGKLCTLTAKIQQLKQKLSCGETRNVDYYGLIGLRRGCARSELQRAHLLLSLKHKPEKAIGFIERCELADERDLESVKDRARMASMLLYRLLQKGYTNVMNTILEEEASAEKQKKMVLQLQQTNANVHVIQASTNAHVTQASTNAHVNVNVNVNAVVEVLQKKSREEMLEEKYAMSSPSIVNPTVFQGVFCRDLTVVGNLLSQRFSNRSIPVKYEALSC* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3161 593 Gene3D Tetratricopeptide repeat domain 215 360 IPR011990 GO:0005515
Mtr1g3161 593 SUPERFAMILY TPR-like 252 450 IPR011990 GO:0005515
Mtr1g3161 593 MobiDBLite consensus disorder prediction 214 233 - -
Mtr1g3161 593 PANTHER - 2 593 - -
Mtr1g3161 593 SMART tpr_5 159 192 IPR019734 GO:0005515
Mtr1g3161 593 SMART tpr_5 286 319 IPR019734 GO:0005515
Mtr1g3161 593 CDD DnaJ 401 435 IPR001623 -
Mtr1g3161 593 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 2 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3161 Mtr-Chr1 42904947 42907581 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3161 - - gmx:100800231 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3161 1 42904947 42907581 Mtr1g3161 1 42904947 42907581 ECH
Mtr7g3473 7 51713693 51717010 Mtr1g3161 1 42904947 42907581 PCT