Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3160 ATGGATTCGATCCTCATCACCATTGTATTTCTCCTTCTCTTAATGAGTAGTGAAGCACGTGACCCTTTTGCATGTGACCCAAAAAACACCTCCACAAATAACTTTCCATTTTGCAAGGCATCACTGCCTATACCAACAAGGGTGAATGACCTCATTGGAAGATTGACATTGCAAGAAAAGGTTAGCATGTTGGTGAACAATGCTGCCGCGGTTCCAAGGGTTGGGATCAAAGGCTATGAGTGGTGGTCAGAGGCTCTTCATGGAGTTTCAAATGTGGGACCAGGAACTAAGTTTGCTGGCCAATTCCCAGCTGCCACTAGCTTCCCTCAAGTCATCACTACCGTTGCTTCATTCAATGCTTCCTTGTGGGAAGCAATTGGACGGGTTGCTTCGGACGAAGCAAGGGCAATGTACAACGGAGGAACGGCAGGGTTGACATATTGGAGTCCAAATGTGAACATTTTTCGGGACCCACGATGGGGTCGTGGACAGGAGACTCCCGGTGAGGATCCAATTCTAGCAGGTAAATACGCTGCCAGTTATGTGAGAGGACTACAGGGAACAGACAGTAGCCGGTTAAAGGTGGCTGCTTCATGTAAACACTTTACCGCTTATGATCTCGATAATTGGAATGGTGTGGATCGCTTTCACTTTAATGCAAAGGTTAGCAAACAGGACATGGAAGACACGTTCAATGTGCCATTTAGGATGTGTGTGAAGGAAGGTAATGTGGCTAGTGTGATGTGTTCTTACAATCAGGTTAATGGTGTCCCTACTTGTGCTGACCCCAATCTTCTAAAGAGAACAATTCGTGGTCAATGGCATCTTGATGGGTACATTGTATCAGATTGTGACTCTGTTGGGGTATTTTACACTAACCAACATTATACATCAACACCAGAAGAAGCTGCTGCTGATGCCATTAAAGCAGGTTTGGATTTGGATTGTGGACCTTTCCTTGCACAACATACCCAAAATGCTGTTAAAAAAGGCCTGTTAACCGAAACTGATGTAAATGGTGCTTTGGCAAACACACTTACAGTCCAAATGAGGTTAGGAATGTTTGATGGTGAGCCATCAGCTCAACCATATGGCAACCTTGGTCCAACTGATGTGTGCACTCCAACTCACCAAGAGCTAGCTCTTGATGCTGCAAGACAAGGAATTGTGCTTCTTAAGAACACTGGTCCTTCTTTGCCTCTCTCCACAAAGAATCATCAGACTGTGGCAGTAATTGGGCCTAATTCTAATGCTACTGTCACCATGATCGGCAACTATGCTGGTATTGCTTGTGGATACACAAGTCCACTACAAGGAATAGGGAAATATGCAAGGACTATTCACGAGCCCGGTTGTGCGAATGTGGCATGCAATGATGATAAACAATTTGGGTCGGCTCTAAATGCAGCCCGTCAAGCGGATGCTACTGTTCTAGTGATGGGATTGGATCAGTCAATTGAGGCTGAAATGGTAGATAGGACTGGTTTACTTCTTCCTGGACATCAACAAGACCTTGTTTCAAAGGTAGCGGCTGCCTCGAGAGGCCCAACCATTTTGGTCTTAATGTCTGGTGGGCCTATAGATATAACTTTTGCAAAGAATGATCCTCGAATTATGGGCATTTTGTGGGCTGGTTATCCTGGTCAAGCCGGTGGTGCTGCCATTGCGGATATATTGTTTGGAACCACTAACCCAGGAGCTAAGCTACCTATGACATGGTACCCACAAGGTTACCTCAAAAACTTGGCAATGACAAATATGGCAATGAGACCAAGCTCATCCACAGGGTACCCTGGGAGAACCTATCGTTTTTACAACGGCCCTGTGGTATATCCATTTGGTTACGGATTATCTTACACAAACTTTGTTCACACATTAGCTAGTGCACCAAAAGTGGTGTCAGTTCCAGTAGACGGACACCGCCGTGGAAACAGCTCAAACAAAGCAGCAATTAGAGTGACACATGCACGATGTGGCAAGCTTTCAATTAGACTTGACATTGATGTTAAAAACGTTGGTTCAAAAGATGGTACTAACACTTTGTTGGTGTTCTCAGTACCACCTACAGGTAATGGTCATTGGGCACCACAGAAGCAACTAGTGGCTTTTGAGAAAGTTTATGTTCCTGCTAAGGCTCAGCAACGAGTGAGGATCAATATTCATGTATGTAAGCTTTTGAGTGTGGTTGATAAGTCTGGGACTAGGAGAATTCCAATGGGAGCACATAGTATTCACATTGGTGATGTTAAACATTTTGTATCACTTCAAGAACAAAAACTAGGGATCATCAAGACCTGA 2298 0.446 MDSILITIVFLLLLMSSEARDPFACDPKNTSTNNFPFCKASLPIPTRVNDLIGRLTLQEKVSMLVNNAAAVPRVGIKGYEWWSEALHGVSNVGPGTKFAGQFPAATSFPQVITTVASFNASLWEAIGRVASDEARAMYNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPILAGKYAASYVRGLQGTDSSRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDMEDTFNVPFRMCVKEGNVASVMCSYNQVNGVPTCADPNLLKRTIRGQWHLDGYIVSDCDSVGVFYTNQHYTSTPEEAAADAIKAGLDLDCGPFLAQHTQNAVKKGLLTETDVNGALANTLTVQMRLGMFDGEPSAQPYGNLGPTDVCTPTHQELALDAARQGIVLLKNTGPSLPLSTKNHQTVAVIGPNSNATVTMIGNYAGIACGYTSPLQGIGKYARTIHEPGCANVACNDDKQFGSALNAARQADATVLVMGLDQSIEAEMVDRTGLLLPGHQQDLVSKVAAASRGPTILVLMSGGPIDITFAKNDPRIMGILWAGYPGQAGGAAIADILFGTTNPGAKLPMTWYPQGYLKNLAMTNMAMRPSSSTGYPGRTYRFYNGPVVYPFGYGLSYTNFVHTLASAPKVVSVPVDGHRRGNSSNKAAIRVTHARCGKLSIRLDIDVKNVGSKDGTNTLLVFSVPPTGNGHWAPQKQLVAFEKVYVPAKAQQRVRINIHVCKLLSVVDKSGTRRIPMGAHSIHIGDVKHFVSLQEQKLGIIKT* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3160 765 Gene3D Immunoglobulins 645 762 IPR013783 -
Mtr1g3160 765 SUPERFAMILY (Trans)glycosidases 35 388 IPR017853 -
Mtr1g3160 765 Pfam Glycosyl hydrolase family 3 N terminal domain 102 345 IPR001764 GO:0004553|GO:0005975
Mtr1g3160 765 PANTHER SUGAR HYDROLASE-RELATED 6 761 IPR044993 GO:0009044|GO:0045493
Mtr1g3160 765 Gene3D - 375 620 IPR036881 GO:0004553|GO:0005975
Mtr1g3160 765 PANTHER ALPHA-L-ARABINOFURANOSIDASE/BETA-D-XYLOSIDASE 6 761 - -
Mtr1g3160 765 SMART Fn3_like_2 679 750 IPR026891 -
Mtr1g3160 765 Pfam Fibronectin type III-like domain 686 748 IPR026891 -
Mtr1g3160 765 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 389 622 IPR036881 GO:0004553|GO:0005975
Mtr1g3160 765 Gene3D - 47 363 IPR036962 GO:0004553|GO:0005975
Mtr1g3160 765 Pfam Glycosyl hydrolase family 3 C-terminal domain 389 619 IPR002772 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3160 Mtr-Chr1 42884570 42888424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3160 3 765 Glycoside Hydrolase AT1G02640 73.629 0.0 1182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3160 - - gmx:100798630 1361.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3160 1 42884570 42888424 Mtr1g3160 1 42884570 42888424 ECH
Mtr7g3474 7 51722169 51729645 Mtr1g3160 1 42884570 42888424 PCT