Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3138 ATGAATTACAGCCGTTTGATTTCCGGCGGAGGAAGGCTTCTCCGACGACTATGCACGGCTGCGACGGCGGCTGAGCTTCCGAATAAGAAGGCAAACCTTTACCGAAGACTAGCGGACCTAGAAAAGACCGGAGGAACCGTGTCGCAGACGTTGAACCAGTATATAATCGAAGGCAAAGCCTTAGGAAAAGATGAACTCGAGAGATGCGTCCAGGAGCTTCGAAAGTATCGTAGATTCCATCACGCATTCGAGATAATGGAATGGATGATGATGAGGCAAATTAATTTTTCATGGGATAACTATGCAGTGTATTTAGATCTTGTGTCCAAAGTGAAAGGAGTGGTTGAAGCCGAGAATCACTTCAACAGTTTTCCTCCTCCTGCTAAGAACAAGTACACATACGGTTCTCTTCTAAACTGTTACTGCAAGGAACTAATGCTAGACAAGGCATTGTCTCATTTTGATAAGATGGATGAATTTGGTTATTTGACTAGTTTGTCTTTCACCAATTTGATGTCTATGTATATGAGGCTAAGTCAACCGTCGAAAGTTCCTCAGTTGGTTAATGTTATGAAGGAGAGGAAAATTCGCATGACTGAATTTACATACATTTTGTGGATGAATAGTTGTGCTGCTTTGAATGACCTTGGTGAGGTTGAACGTGTTTATGAGGAGATGAAAAGAGAAGATGAAGACAAAATTGACTGGAAGACTTATAGCAACCTTGCTGCTATCTATATAAAAGCTGGATTTTTTGAGAAAGCCGAGTTGATGCTTAAGAAGGTGGAAGGAGTAATGAAGCCGCGCCAACGCGAAACTTACCATTTCTTGCTGAGCCTTTATGCTGGGACTGGTAATGTTAAAGAGGTTTATAGAGTGTGGGGGACCCTCAAGAAGATCACCCCGGTGACCAATCGGAGCTATCTTATTATGCTTTCTAACCTTAGAAGGCTTAATGATATGGAGGGCATAATAAAATTGTTTAAGGAGTGGGAATCTAGGCATGTTAGTTATGATTCTAGGTTGGTTGGTGTTGCAGTGCAGGCTTACTTGAGTCAAAACATGGACAAGGAAGCTGTGTTGGTCTTTGAGGAAGCTCTCAAGAGCTGCAGAGGACCTTTCTTTAGGATTCGGGAAATGTTCATGGCATCTTTATTGGAGAAAGGTCAATTGGATGGTGCTATGAGCCACTTAGAGGCCGCACTTTCAGAAGCCAGCGATTATAAATACCAACCTTCACCACAAGTTGTGAGTGCTTTTCTGAAGTATTATGAAGAAGAAACAGATCTTGATGGTGTTGATGAGTTAAGCAAGATTCTTAGGAGTCACAATTTTGATGAATCCTATATTAAAACTTGCATTACTGCATCCGAATCATCTCCTGGTATTCATACAGTATTGAAGGAAGATTCTTATGTCAACCAAGCGCACGAGAACTTGTAA 1443 0.4165 MNYSRLISGGGRLLRRLCTAATAAELPNKKANLYRRLADLEKTGGTVSQTLNQYIIEGKALGKDELERCVQELRKYRRFHHAFEIMEWMMMRQINFSWDNYAVYLDLVSKVKGVVEAENHFNSFPPPAKNKYTYGSLLNCYCKELMLDKALSHFDKMDEFGYLTSLSFTNLMSMYMRLSQPSKVPQLVNVMKERKIRMTEFTYILWMNSCAALNDLGEVERVYEEMKREDEDKIDWKTYSNLAAIYIKAGFFEKAELMLKKVEGVMKPRQRETYHFLLSLYAGTGNVKEVYRVWGTLKKITPVTNRSYLIMLSNLRRLNDMEGIIKLFKEWESRHVSYDSRLVGVAVQAYLSQNMDKEAVLVFEEALKSCRGPFFRIREMFMASLLEKGQLDGAMSHLEAALSEASDYKYQPSPQVVSAFLKYYEEETDLDGVDELSKILRSHNFDESYIKTCITASESSPGIHTVLKEDSYVNQAHENL* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3138 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Mtr1g3138 480 Pfam PPR repeat 307 334 IPR002885 -
Mtr1g3138 480 Pfam PPR repeat 201 229 IPR002885 -
Mtr1g3138 480 Pfam PPR repeat 238 261 IPR002885 -
Mtr1g3138 480 Pfam PPR repeat 167 196 IPR002885 -
Mtr1g3138 480 Pfam PPR repeat 132 161 IPR002885 -
Mtr1g3138 480 SUPERFAMILY TPR-like 208 408 IPR011990 GO:0005515
Mtr1g3138 480 PANTHER OS12G0527900 PROTEIN 3 480 - -
Mtr1g3138 480 Gene3D Tetratricopeptide repeat domain 301 438 IPR011990 GO:0005515
Mtr1g3138 480 Gene3D Tetratricopeptide repeat domain 46 165 IPR011990 GO:0005515
Mtr1g3138 480 PANTHER OS01G0301500 PROTEIN 3 480 - -
Mtr1g3138 480 TIGRFAM PPR: pentatricopeptide repeat domain 132 162 IPR002885 -
Mtr1g3138 480 TIGRFAM PPR: pentatricopeptide repeat domain 201 230 IPR002885 -
Mtr1g3138 480 Gene3D Tetratricopeptide repeat domain 166 300 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3138 Mtr-Chr1 42665225 42668012 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3138 33 450 EF-hand Containing Proteins AT1G02150 34.906 7.41e-78 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3138 - - gmx:100781679 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3138 1 42665225 42668012 Mtr1g3138 1 42665225 42668012 ECH
Mtr1g3138 1 42665225 42668012 Mtr7g3265 7 49711758 49712759 PCT